Rh5BG194200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007563
Physical Location & Seq
Forward (+)
21425656 .. 21436065
10410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG194200.1

Sequence Viewer

Length: 279 bp
ATGCCTGGGCAGCAGGTCGGGGCGGCAATGGTTACACGAGCAGCGTCGTCTCCCAGCAGCATCCAGCATCGTCTCCAGATTCTAAAGGGCTGTGGGGATTATGTTCGATCATCAAAAGGCTATAAATTTGAGTGGGATGTCAAAAAAGGCTTACACAAGATCCTTCAATTCCTTGCAGAATGGCCTTGGTTCAAGAACAAAGTGGATGTTAGAGAACTTGCAATTCAATTTGGCAATGGAATCACAAGCAGAAGCTCTTGGATAGTTAACTACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.5

Weight (kDa)

10.08

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 3 cut(s) 167, 193, 227
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 54, 77
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 10, 41, 57
ApoI RAATTY 1 cut(s) 125
BauI CACGAG 1 cut(s) 36
BbvI GCAGC 3 cut(s) 22, 53, 69
BciT130I CCWGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 54, 77
BfmI CTRYAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 4 cut(s) 11, 24, 42, 58
BlsI GCNGC 4 cut(s) 12, 25, 43, 59
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 69, 76
BpmI CTGGAG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 5, 185
Bse3DI GCAATG 2 cut(s) 33, 241
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 5, 185
BseGI GGATG 3 cut(s) 60, 142, 211
BseMI GCAATG 2 cut(s) 33, 241
BseXI GCAGC 3 cut(s) 22, 53, 69
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 54, 77
BsmBI CGTCTC 2 cut(s) 54, 77
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 107, 159
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 33, 241
BssECI CCNNGG 2 cut(s) 5, 185
BssMI GATC 2 cut(s) 107, 159
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 60, 142, 211
BstKTI GATC 2 cut(s) 110, 162
BstMAI GTCTC 2 cut(s) 54, 77
BstMBI GATC 2 cut(s) 107, 159
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 22, 53, 69
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 3 cut(s) 60, 142, 211
BveI ACCTGC 1 cut(s) 4
CseI GACGC 1 cut(s) 33
CviJI RGCY 5 cut(s) 90, 120, 150, 184, 255
CviKI_1 RGCY 5 cut(s) 90, 120, 150, 184, 255
DpnI GATC 2 cut(s) 109, 161
DpnII GATC 2 cut(s) 107, 159
Eco130I CCWWGG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
Esp3I CGTCTC 2 cut(s) 54, 77
FaiI YATR 2 cut(s) 102, 123
Fnu4HI GCNGC 4 cut(s) 11, 24, 42, 58
FokI GGATG 3 cut(s) 47, 149, 218
Fsp4HI GCNGC 4 cut(s) 11, 24, 42, 58
GluI GCNGC 4 cut(s) 11, 24, 42, 58
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 184
HgaI GACGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 79, 240
HpaI GTTAAC 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 76, 193
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 176, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 107, 159
LpnPI CCDG 4 cut(s) 18, 67, 77, 89
Lsp1109I GCAGC 3 cut(s) 22, 53, 69
LweI GCATC 2 cut(s) 69, 76
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 109, 161
MboI GATC 2 cut(s) 107, 159
MflI RGATCY 1 cut(s) 159
MluCI AATT 4 cut(s) 125, 167, 222, 227
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 107, 159
PfeI GAWTC 2 cut(s) 79, 240
PkrI GCNGC 4 cut(s) 12, 25, 43, 59
Psp6I CCWGG 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 4
PsuI RGATCY 1 cut(s) 159
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 4 cut(s) 11, 24, 42, 58
Sau3AI GATC 2 cut(s) 107, 159
ScrFI CCNGG 1 cut(s) 6
SetI ASST 2 cut(s) 18, 257
SfaNI GCATC 2 cut(s) 69, 76
SfcI CTRYAG 1 cut(s) 271
Sse9I AATT 4 cut(s) 125, 167, 222, 227
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 185
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 125, 167, 222, 227
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 79, 240
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 3 cut(s) 10, 41, 57
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.