Rroxscaffold_6G00391340
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007563
Physical Location & Seq
Reverse (-)
9190581 .. 9209539
18959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391340.1

Sequence Viewer

Length: 723 bp
ATGAGTAGTGCTGTGGATGGGGAAGAGATTATTGTGCAAAGAGGATTGACCTCTCCGAATCCAAACAAGCTGTCTCCGCGAGCTACCACTAAGTTCCCCTCTGTGACATCAAGTTCGAATCTTCCGGTGAGGCTGTGGGGATTTCGTTCGATCGTCAAAGACTATAAATTCGAGTGGGACGTCGAAAAAGGCTTACACAAGATCCTTCGATTTCTAACAGAATGGCCTTGGTTTAAGAACAAAGAGGATGTGGAGAACGATATTCGGAAGCTTCCTCAAGAAGAAATGTGCCAAGCCGGACCATGTGCCTCCCTGTATGCTTCCCGACCACATGCTCGAAACCTGCACACTATAGTAGGGATGAGCTTTCATCCTCGCATGCCCGGTAGGGGCCGACCCAACCATGCTAGCTTGGTTGCTTACCCTATATCAGTTCTGCCGAAACCACAACCACTCCATAACATCTTGCTCCTTACGTCAATTAAGCAAAGGCCACCGACAGGCTTCCTTTTCTCAAAGGAAATATTCCTTTGGTTCCCCACTTGTGCTTTTGTGCTGTTTTGGGTTGTTCCACCATTTCATCTGAATGGAGAGCCAAGGGAACAGAGGAGAAGAGAGCTTTTGAAGAAAGCTGGAGAGCTTTCGGTTCTCTATGATTGTGAGTATGCTGTCATCATCATTTCTGCTACTGGAAAGCCCTTCGAGTCCTCCAGCTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

240

Amino Acids

27.47

Weight (kDa)

9.6

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 203 - 235 1.4e-09 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 351
AccII CGCG 1 cut(s) 79
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 700
AcyI GRCGYC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 389, 500
AgsI TTSAA 1 cut(s) 625
AluBI AGCT 9 cut(s) 70, 83, 271, 366, 411, 619, 632, 640, 714
AluI AGCT 9 cut(s) 70, 83, 271, 366, 411, 619, 632, 640, 714
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 196
AoxI GGCC 3 cut(s) 224, 391, 491
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 6 cut(s) 56, 88, 97, 129, 152, 184
AspS9I GGNCC 2 cut(s) 299, 391
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 407
AvaII GGWCC 1 cut(s) 299
BccI CCATC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 299, 391
BmiI GGNNCC 2 cut(s) 392, 536
BmrFI CCNGG 1 cut(s) 384
BmtI GCTAGC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 654, 694
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 227, 596
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 500
Bse1I ACTGG 1 cut(s) 694
BseDI CCNNGG 2 cut(s) 227, 596
BseGI GGATG 4 cut(s) 22, 253, 366, 370
BseLI CCNNNNNNNGG 2 cut(s) 389, 500
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 226, 393, 493
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 3 cut(s) 125, 297, 384
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 389, 500
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 3 cut(s) 226, 393, 493
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 150, 201
BspACI CCGC 1 cut(s) 77
BspANI GGCC 3 cut(s) 226, 393, 493
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 392, 536
BspMI ACCTGC 1 cut(s) 351
BspOI GCTAGC 1 cut(s) 411
BspPI GGATC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 116
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 2 cut(s) 227, 596
BssMI GATC 2 cut(s) 150, 201
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 227, 596
Bst6I CTCTTC 2 cut(s) 18, 607
BstACI GRCGYC 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 81, 380, 409
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 4 cut(s) 22, 253, 366, 370
BstFNI CGCG 1 cut(s) 79
BstKTI GATC 2 cut(s) 153, 204
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 150, 201
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 2 cut(s) 335, 382
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 3 cut(s) 226, 393, 493
BtsCI GGATG 4 cut(s) 22, 253, 366, 370
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 81, 380, 409
Cfr13I GGNCC 2 cut(s) 299, 391
CviAII CATG 4 cut(s) 303, 332, 379, 404
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 152, 203
DpnII GATC 2 cut(s) 150, 201
Eam1104I CTCTTC 2 cut(s) 18, 607
EarI CTCTTC 2 cut(s) 18, 607
Eco130I CCWWGG 2 cut(s) 227, 596
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 227, 596
ErhI CCWWGG 2 cut(s) 227, 596
FaeI CATG 4 cut(s) 306, 335, 382, 407
FaqI GGGAC 1 cut(s) 191
FatI CATG 4 cut(s) 302, 331, 378, 403
FokI GGATG 4 cut(s) 29, 260, 357, 373
FspBI CTAG 1 cut(s) 408
GsuI CTGGAG 2 cut(s) 654, 694
HaeIII GGCC 3 cut(s) 226, 393, 493
HapII CCGG 3 cut(s) 125, 297, 384
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 306, 335, 382, 407
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 3 cut(s) 58, 118, 704
HpaII CCGG 3 cut(s) 125, 297, 384
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 57, 267, 585, 719
Hpy188III TCNNGA 2 cut(s) 278, 324
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 215, 709
HpyCH4IV ACGT 2 cut(s) 180, 476
HpyCH4V TGCA 2 cut(s) 37, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 2 cut(s) 180, 476
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 306, 335, 382, 407
Kzo9I GATC 2 cut(s) 150, 201
LmnI GCTCC 1 cut(s) 474
LpnPI CCDG 8 cut(s) 138, 310, 326, 356, 397, 486, 618, 675
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 180, 476
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 152, 203
MboI GATC 2 cut(s) 150, 201
MboII GAAGA 5 cut(s) 35, 113, 293, 624, 637
MflI RGATCY 1 cut(s) 201
MluCI AATT 2 cut(s) 167, 480
MlyI GAGTC 1 cut(s) 713
MseI TTAA 2 cut(s) 234, 483
MslI CAYNNNNRTG 1 cut(s) 585
MspI CCGG 3 cut(s) 125, 297, 384
MspR9I CCNGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 384
NdeII GATC 2 cut(s) 150, 201
NheI GCTAGC 1 cut(s) 407
NlaIII CATG 4 cut(s) 306, 335, 382, 407
NlaIV GGNNCC 2 cut(s) 392, 536
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 2 cut(s) 335, 382
NspV TTCGAA 1 cut(s) 116
PaeI GCATGC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 2 cut(s) 58, 118
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 392, 536
PspPI GGNCC 2 cut(s) 299, 391
PsuI RGATCY 1 cut(s) 201
PvuI CGATCG 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 2 cut(s) 234, 483
Sau3AI GATC 2 cut(s) 150, 201
Sau96I GGNCC 2 cut(s) 299, 391
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 382
Sse9I AATT 2 cut(s) 167, 480
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 525
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 227, 596
TaiI ACGT 2 cut(s) 183, 479
TaqI TCGA 7 cut(s) 116, 149, 171, 183, 208, 337, 702
TasI AATT 2 cut(s) 167, 480
TfiI GAWTC 2 cut(s) 58, 118
Tru1I TTAA 2 cut(s) 234, 483
Tru9I TTAA 2 cut(s) 234, 483
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 359, 569
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 167
XceI RCATGY 2 cut(s) 335, 382
XspI CTAG 1 cut(s) 408
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.