Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

10791102 .. 10791626

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTGCACGCATCGTTCGGCCGGTGGAGACAAGCTGCGAGTTCGGATCAAACTGCAAGGCGCTTGTTGGGACTTTGAGCATTGTTTCGATTTTTGGTGGTTTAGCTGGTGGTAGAACAGTAGACATGTTAGGTAGAAAGTGGACAATGACATTAGCTGCTCTTGTCTTTCAAACGAGTGCAGTCGTATTGACACTTGCTCCTTCATTTGATGTACCGATGATTGGAAGGCTCTTGGGAATTGGGATAGGAACGAAGTTTGGATGCGGGACCTTAGTACGAGGCCATCACCGCATCAAAGAGTCCCGTAAGGGATATGGTAAGGGTCCGGGCTTTGAATCTGTTATGGGTGAACTGTGGTGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

122

Amino Acids

12.99

Weight (kDa)

9.94

Isoelectric Point (pI)

15.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	20 - 87	3.2e-08	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	2 cut(s)	267, 292
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	20
AfaI	GTAC	2 cut(s)	216, 279
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	173, 338
AluBI	AGCT	3 cut(s)	36, 107, 158
AluI	AGCT	3 cut(s)	36, 107, 158
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	20, 283
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	36, 158
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	270, 326
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	281, 362
AvaII	GGWCC	2 cut(s)	270, 326
BaeGI	GKGCMC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	23, 145
BccI	CCATC	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	2 cut(s)	37, 159
BlsI	GCNGC	2 cut(s)	38, 160
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	270, 326
BmgT120I	GGNCC	2 cut(s)	270, 326
BmiI	GGNNCC	2 cut(s)	271, 327
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	21, 254, 303
BpuMI	CCSGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	22
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	23, 145
BsgI	GTGCAG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	22, 285
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	23, 329
BslFI	GGGAC	3 cut(s)	85, 283, 289
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	3 cut(s)	85, 283, 289
BsnI	GGCC	2 cut(s)	22, 285
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	267, 292
BspANI	GGCC	2 cut(s)	22, 285
BspLI	GGNNCC	2 cut(s)	271, 327
BspPI	GGATC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	121, 357
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	47
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	23, 145
BstZI	CGGCCG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	22, 285
BtsCI	GGATG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	270, 326
Csp6I	GTAC	2 cut(s)	215, 278
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	7 cut(s)	22, 36, 107, 158, 232, 285, 333
CviKI_1	RGCY	7 cut(s)	22, 36, 107, 158, 232, 285, 333
CviQI	GTAC	2 cut(s)	215, 278
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	20
EagI	CGGCCG	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	270, 326
Eco52I	CGGCCG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	270
FaeI	CATG	1 cut(s)	130
FaiI	YATR	3 cut(s)	128, 318, 347
FaqI	GGGAC	3 cut(s)	85, 283, 289
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	37, 159
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	37, 159
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	37, 159
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	22, 285
HapII	CCGG	2 cut(s)	23, 329
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	302, 338
HpaII	CCGG	2 cut(s)	23, 329
HphI	GGTGA	2 cut(s)	281, 362
Hpy166II	GTNNAC	4 cut(s)	8, 124, 144, 353
Hpy188I	TCNGA	1 cut(s)	47
Hpy8I	GTNNAC	4 cut(s)	8, 124, 144, 353
HpyAV	CCTTC	2 cut(s)	213, 222
HpyCH4III	ACNGT	2 cut(s)	121, 357
HpyCH4V	TGCA	3 cut(s)	8, 57, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	3 cut(s)	36, 93, 342
Lsp1109I	GCAGC	2 cut(s)	23, 145
LweI	GCATC	3 cut(s)	21, 254, 303
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	1 cut(s)	275
MspI	CCGG	2 cut(s)	23, 329
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	271, 327
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	38, 160
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	271, 327
PspPI	GGNCC	2 cut(s)	270, 326
PspPPI	RGGWCCY	1 cut(s)	270
RsaI	GTAC	2 cut(s)	216, 279
RsaNI	GTAC	2 cut(s)	215, 278
SatI	GCNGC	2 cut(s)	37, 159
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	2 cut(s)	270, 326
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	38, 109, 136, 160, 275
SfaNI	GCATC	3 cut(s)	21, 254, 303
SinI	GGWCC	2 cut(s)	270, 326
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	267, 292
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	121, 357
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	36, 158
TspDTI	ATGAA	1 cut(s)	195
VneI	GTGCAC	1 cut(s)	6
VpaK11BI	GGWCC	2 cut(s)	270, 326
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.