Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

46026923 .. 46031492

Gene Structure 4570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTTATGATCTCCAAGCCTGCAGCTCTCCAATATCGAACACCACCATCTGCGCCGCCGGAATCAAGTCAAGTTTCCAGCTTGTTAGATCGAAGCTACCGCCGGAGCTCGGTTAATGGCAGCGGTAGAAGCCGGAGGCAGGTGTCGAAGCATGTTGCAACTGTCCAAAGCGGATGCGACTACCGAACCTTGATGGCGGCAACTCGATTTTGTGGTGAACAGGAGCCGACAAACGATGGTGAAGTATGGATCACCGAGCCCGATCACGGAAATTCCTCACTTGCTTCTCGCTTGGTTTCCTTGAGTTGTTTTGATTCAAAGAGAATTTGTGGTGGGAAGATTGCACGTTTTGGTTTTGCTCCTATCTTGTTGTGCATAATAATCGGTCAAACAGTTCTCTTTATGAACTCGGTCCTTGCAACTCCTAATTTGACAAAGGTTACTGCTTCTTGTTGGTTTTTGGGGATGGGCAACTATTTCTTTTGCGGTGGGTTCGCTCATTATGTTGTACGGTACGGTAGTGAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGCCATATAGATACGGGGATCCTCTCGAAGGACTGCTTCCTAGGCATCTCATGCCATCGGGGAGGGACGCCACCCGATGACGCATCGGAAGGACGCCAACCGATGACGCATCGGAAGGGACCGCAACCGAGTAGGAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

234

Amino Acids

25.51

Weight (kDa)

9.35

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AciI	CCGC	8 cut(s)	56, 100, 123, 171, 197, 486, 683, 700
AclWI	GGATC	4 cut(s)	257, 521, 574, 587
AcsI	RAATTY	2 cut(s)	271, 324
AcyI	GRCGYC	2 cut(s)	629, 655
AfaI	GTAC	2 cut(s)	510, 515
AfiI	CCNNNNNNNGG	4 cut(s)	109, 139, 266, 589
AgsI	TTSAA	1 cut(s)	318
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	26, 81, 96, 108
AluI	AGCT	4 cut(s)	26, 81, 96, 108
Alw21I	GWGCWC	1 cut(s)	110
AlwI	GGATC	4 cut(s)	257, 521, 574, 587
ApeKI	GCWGC	3 cut(s)	23, 120, 561
ApoI	RAATTY	2 cut(s)	271, 324
AspA2I	CCTAGG	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	412, 680
AsuHPI	GGTGA	3 cut(s)	227, 244, 251
AvaII	GGWCC	2 cut(s)	412, 680
AvrII	CCTAGG	1 cut(s)	601
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BamHI	GGATCC	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	110, 261
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	35, 132, 573
BccI	CCATC	5 cut(s)	55, 187, 230, 460, 624
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	5 cut(s)	24, 56, 121, 198, 562
BlnI	CCTAGG	1 cut(s)	601
BlsI	GCNGC	5 cut(s)	25, 57, 122, 199, 563
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	412, 680
BmgT120I	GGNCC	2 cut(s)	412, 680
BmiI	GGNNCC	3 cut(s)	225, 581, 681
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	4 cut(s)	164, 615, 653, 679
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	629, 655
BsaJI	CCNNGG	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 139, 266, 589
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	2 cut(s)	179, 471
BseLI	CCNNNNNNNGG	4 cut(s)	109, 139, 266, 589
BseXI	GCAGC	3 cut(s)	35, 132, 573
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	59, 103, 133
BslFI	GGGAC	3 cut(s)	566, 640, 693
BslI	CCNNNNNNNGG	4 cut(s)	109, 139, 266, 589
BsmFI	GGGAC	3 cut(s)	566, 640, 693
Bsp1286I	GDGCHC	2 cut(s)	110, 261
Bsp143I	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
BspACI	CCGC	8 cut(s)	56, 100, 123, 171, 197, 486, 683, 700
BspLI	GGNNCC	3 cut(s)	225, 581, 681
BspMAI	CTGCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	4 cut(s)	257, 521, 574, 587
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
BssNI	GRCGYC	2 cut(s)	629, 655
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	163, 394, 513, 518
BstACI	GRCGYC	2 cut(s)	629, 655
BstAPI	GCANNNNNTGC	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	179, 471
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	12, 91, 252, 265, 529, 582
BstMBI	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 603, 612
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	35, 132, 573
BstX2I	RGATCY	2 cut(s)	526, 579
BstYI	RGATCY	2 cut(s)	526, 579
BtsCI	GGATG	2 cut(s)	179, 471
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	412, 680
CseI	GACGC	4 cut(s)	637, 650, 663, 676
Csp6I	GTAC	2 cut(s)	509, 514
CviAII	CATG	2 cut(s)	152, 612
CviQI	GTAC	2 cut(s)	509, 514
DpnI	GATC	6 cut(s)	11, 90, 251, 264, 528, 581
DpnII	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	601
Eco24I	GRGCYC	2 cut(s)	110, 261
Eco47I	GGWCC	2 cut(s)	412, 680
Eco53kI	GAGCTC	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	110, 261
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	2 cut(s)	155, 615
FaiI	YATR	9 cut(s)	8, 153, 247, 377, 404, 504, 567, 569, 613
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	3 cut(s)	566, 640, 693
FatI	CATG	2 cut(s)	151, 611
Fnu4HI	GCNGC	5 cut(s)	24, 56, 121, 198, 562
FokI	GGATG	2 cut(s)	186, 478
FriOI	GRGCYC	2 cut(s)	110, 261
Fsp4HI	GCNGC	5 cut(s)	24, 56, 121, 198, 562
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	5 cut(s)	24, 56, 121, 198, 562
HapII	CCGG	3 cut(s)	59, 103, 133
HgaI	GACGC	4 cut(s)	637, 650, 663, 676
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	629, 655
Hin1II	CATG	2 cut(s)	155, 615
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	62, 314
HpaII	CCGG	3 cut(s)	59, 103, 133
HphI	GGTGA	3 cut(s)	227, 244, 251
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	649, 675
Hpy188III	TCNNGA	1 cut(s)	586
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	583, 644, 670
HpyCH4III	ACNGT	4 cut(s)	163, 394, 513, 518
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	23, 158, 344, 375, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 603, 612
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	629, 655
Hsp92II	CATG	2 cut(s)	155, 615
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
LmnI	GCTCC	3 cut(s)	105, 223, 364
Lsp1109I	GCAGC	3 cut(s)	35, 132, 573
LweI	GCATC	4 cut(s)	164, 615, 653, 679
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	6 cut(s)	11, 90, 251, 264, 528, 581
MboI	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
MboII	GAAGA	2 cut(s)	349, 536
MflI	RGATCY	2 cut(s)	526, 579
MhlI	GDGCHC	2 cut(s)	110, 261
MluCI	AATT	3 cut(s)	271, 324, 427
MnlI	CCTC	5 cut(s)	129, 286, 593, 617, 690
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	3 cut(s)	59, 103, 133
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	129, 603, 612
NdeII	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
NlaIII	CATG	2 cut(s)	155, 615
NlaIV	GGNNCC	3 cut(s)	225, 581, 681
NspI	RCATGY	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	62, 314
PkrI	GCNGC	5 cut(s)	25, 57, 122, 199, 563
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	225, 581, 681
PspPI	GGNCC	2 cut(s)	412, 680
PstI	CTGCAG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	526, 579
RsaI	GTAC	2 cut(s)	510, 515
RsaNI	GTAC	2 cut(s)	509, 514
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	5 cut(s)	24, 56, 121, 198, 562
Sau3AI	GATC	6 cut(s)	9, 88, 249, 262, 526, 579
Sau96I	GGNCC	2 cut(s)	412, 680
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	110, 261
SetI	ASST	8 cut(s)	28, 83, 98, 110, 144, 191, 349, 441
SfaNI	GCATC	4 cut(s)	164, 615, 653, 679
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	412, 680
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	271, 324, 427
SsiI	CCGC	8 cut(s)	56, 100, 123, 171, 197, 486, 683, 700
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	4 cut(s)	163, 394, 513, 518
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	5 cut(s)	37, 91, 146, 205, 587
TaqII	GACCGA	2 cut(s)	374, 400
TasI	AATT	3 cut(s)	271, 324, 427
TauI	GCSGC	2 cut(s)	58, 200
TfiI	GAWTC	2 cut(s)	62, 314
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	3 cut(s)	23, 120, 561
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	412, 680
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	2 cut(s)	271, 324
XceI	RCATGY	1 cut(s)	155
XmaJI	CCTAGG	1 cut(s)	601
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.