Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

21615798 .. 21616699

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGGCTTGCGAAACCATCGGAAAATCGCATGCACATCTTGACCGGAGACGCCGAGTCCGTGCTCCTCCATTCTCACACCTCCATTCCGACTTGAGTCAACCACGCCATGTGGGAGCAGCTCCTCTCGCTCGAGGTGGAAGAAGCACGCTGGTTGAGGAGTTGAAGGGCGGCGGAGATTGGTGTACGCACCGTTCAGCGAGGATTGAGACAAGCTCCGAGTTCGACCATCAACTGCAGGTGCTTGTTGGGGCTTTTCGGGAGGTTTCACAAGTACACAAGTCTAGGCCGCACTTTGCTTTACTATACGGAAGCCTTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCGGTGCGATATCTATTTGCTTTTATGGCATTTCAGCGATTGGCACAATGGTTGCACCAACCGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

9.14

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	229
AciI	CCGC	5 cut(s)	5, 171, 174, 290, 428
AclWI	GGATC	2 cut(s)	359, 372
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	2 cut(s)	187, 276
AgsI	TTSAA	1 cut(s)	166
AhdI	GACNNNNNGTC	1 cut(s)	56
AluBI	AGCT	2 cut(s)	122, 216
AluI	AGCT	2 cut(s)	122, 216
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	43, 203
AlwI	GGATC	2 cut(s)	359, 372
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	26, 237
BcoDI	GTCTC	2 cut(s)	43, 203
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	236, 431
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	4 cut(s)	6, 120, 172, 290
BlsI	GCNGC	4 cut(s)	7, 121, 173, 291
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	366
BoxI	GACNNNNGTC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuEI	CTTGAG	2 cut(s)	115, 338
BsaHI	GRCGYC	1 cut(s)	52
BsaWI	WCCGGW	2 cut(s)	45, 367
BseRI	GAGGAG	4 cut(s)	57, 114, 173, 335
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	46, 368
BsmAI	GTCTC	2 cut(s)	43, 203
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	5 cut(s)	5, 171, 174, 290, 428
BspANI	GGCC	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	359, 372
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	10, 33, 149
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	43, 203
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 392, 427
BstNSI	RCATGY	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSFI	CTRYAG	2 cut(s)	236, 431
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	3 cut(s)	10, 33, 149
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	186, 275
CviAII	CATG	2 cut(s)	32, 110
CviJI	RGCY	6 cut(s)	8, 122, 216, 254, 289, 315
CviKI_1	RGCY	6 cut(s)	8, 122, 216, 254, 289, 315
CviQI	GTAC	2 cut(s)	186, 275
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DriI	GACNNNNNGTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	35, 113
FaiI	YATR	7 cut(s)	33, 111, 307, 334, 336, 392, 433
FatI	CATG	2 cut(s)	31, 109
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	4 cut(s)	6, 120, 172, 290
Fsp4HI	GCNGC	4 cut(s)	6, 120, 172, 290
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	4 cut(s)	6, 120, 172, 290
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	46, 368
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	35, 113
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	57, 97
HpaII	CCGG	2 cut(s)	46, 368
Hpy166II	GTNNAC	3 cut(s)	101, 186, 277
Hpy188I	TCNGA	3 cut(s)	23, 91, 220
Hpy188III	TCNNGA	2 cut(s)	41, 260
Hpy8I	GTNNAC	3 cut(s)	101, 186, 277
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	35, 238, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 392, 427
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	35, 113
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	5 cut(s)	70, 116, 127, 221, 322
LpnPI	CCDG	4 cut(s)	59, 137, 224, 381
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	285
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	1 cut(s)	153
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	67
MlyI	GAGTC	2 cut(s)	66, 106
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	9 cut(s)	78, 92, 128, 135, 151, 195, 256, 313, 355
MspI	CCGG	2 cut(s)	46, 368
MwoI	GCNNNNNNNGC	3 cut(s)	128, 392, 427
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	35, 113
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	80
NspI	RCATGY	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	7, 121, 173, 291
PleI	GAGTC	2 cut(s)	65, 105
PpsI	GAGTC	2 cut(s)	65, 105
PshAI	GACNNNNGTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	366
PspXI	VCTCGAGB	1 cut(s)	132
PsrI	GAACNNNNNNTAC	2 cut(s)	178, 210
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	187, 276
RsaNI	GTAC	2 cut(s)	186, 275
SatI	GCNGC	4 cut(s)	6, 120, 172, 290
Sau3AI	GATC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	66, 106
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	84, 124, 139, 218, 243, 267
SfcI	CTRYAG	2 cut(s)	236, 431
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	94, 132, 317
SmoI	CTYRAG	3 cut(s)	94, 132, 317
SphI	GCATGC	1 cut(s)	35
SsiI	CCGC	5 cut(s)	5, 171, 174, 290, 428
SspMI	CTAG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	133, 225
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	3 cut(s)	8, 174, 292
TseI	GCWGC	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	50, 324
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	132
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.