Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026455.1

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1904

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

ttgaagactgaggattgggatagggtggtggcggttttcgtgttggggaaggagtggcagttcaaggactggcctttcaaggaccatgtggagatttttaataagattatgggatttttcatgcggtttgaagatgatagtgtggagtcagcaaagattgtgaagcagtggaatgtgaagatcatctcgattagcaagaataagcggcaccaagatagagctgcggcattggaggtgtgggatcggctagaagagtttgtgcggtcacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC73_C CDC73_N

Protein Analysis

90

Amino Acids

10.94

Weight (kDa)

8.23

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	5 cut(s)	32, 124, 205, 224, 262
AclWI	GGATC	1 cut(s)	249
AgsI	TTSAA	4 cut(s)	4, 64, 79, 131
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	206, 222, 225
BlsI	GCNGC	3 cut(s)	207, 223, 226
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	180, 241
BspACI	CCGC	5 cut(s)	32, 124, 205, 224, 262
BspANI	GGCC	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	180, 241
Bst6I	CTCTTC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	183, 244
BstMBI	GATC	2 cut(s)	180, 241
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	2 cut(s)	86, 121
CviJI	RGCY	3 cut(s)	73, 221, 247
CviKI_1	RGCY	3 cut(s)	73, 221, 247
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	182, 243
DpnII	GATC	2 cut(s)	180, 241
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	82
FaeI	CATG	2 cut(s)	89, 124
FaiI	YATR	3 cut(s)	87, 110, 122
FatI	CATG	2 cut(s)	85, 120
Fnu4HI	GCNGC	3 cut(s)	206, 222, 225
Fsp4HI	GCNGC	3 cut(s)	206, 222, 225
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	206, 222, 225
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	89, 124
HinfI	GANTC	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	89, 124
Kzo9I	GATC	2 cut(s)	180, 241
LpnPI	CCDG	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	182, 243
MboI	GATC	2 cut(s)	180, 241
MboII	GAAGA	4 cut(s)	16, 143, 190, 263
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	4, 226
MseI	TTAA	1 cut(s)	99
NdeII	GATC	2 cut(s)	180, 241
NlaIII	CATG	2 cut(s)	89, 124
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	207, 223, 226
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	206, 222, 225
Sau3AI	GATC	2 cut(s)	180, 241
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	155
SetI	ASST	2 cut(s)	223, 237
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	5 cut(s)	32, 124, 205, 224, 262
SspMI	CTAG	1 cut(s)	248
TaqI	TCGA	1 cut(s)	188
TauI	GCSGC	2 cut(s)	208, 227
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.