Rroxscaffold_6G00391920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007563
Physical Location & Seq
Reverse (-)
10791647 .. 10798252
6606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391920.1

Sequence Viewer

Length: 273 bp
ATGGGTGCTGCACATTTCGGGCTGGTGGAGACAAGCTCCGAGTTCGGATCAAACCGCAAGCTGCTTGTTGGTAAGCTCCGAAACCTTGTTGATTTAAGCTCGCTTGGTTCCCTTGAGTTGTTTGATTCGGAGAGAAGAGTGACAGTTGATTACGAGGCCATCACTGCATCAAAGAGTCCTGTAAGGGATATGGTAAGGGTCGGTGGAGACGGGGTGAAGCGAGCTTCGATCGCCATGGTGCAGCTTGAGATGGAAGAAGCTGCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

5.33

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 55
AluBI AGCT 7 cut(s) 36, 61, 76, 99, 224, 244, 260
AluI AGCT 7 cut(s) 36, 61, 76, 99, 224, 244, 260
Alw26I GTCTC 2 cut(s) 23, 201
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 5 cut(s) 8, 61, 241, 260, 263
AsuHPI GGTGA 1 cut(s) 226
BbvI GCAGC 4 cut(s) 48, 247, 250, 253
BccI CCATC 2 cut(s) 167, 244
BcoDI GTCTC 2 cut(s) 23, 201
BfaI CTAG 1 cut(s) 267
BisI GCNGC 5 cut(s) 9, 62, 242, 261, 264
BlsI GCNGC 5 cut(s) 10, 63, 243, 262, 265
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuEI CTTGAG 2 cut(s) 134, 266
BsaJI CCNNGG 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
BseDI CCNNGG 1 cut(s) 234
BseXI GCAGC 4 cut(s) 48, 247, 250, 253
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 23, 201
BsmBI CGTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 47, 228
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 47, 228
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 59, 101, 222
BstDSI CCRYGG 1 cut(s) 234
BstKTI GATC 2 cut(s) 50, 231
BstMAI GTCTC 2 cut(s) 23, 201
BstMBI GATC 2 cut(s) 47, 228
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 164, 230
BstV1I GCAGC 4 cut(s) 48, 247, 250, 253
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 59, 101, 222
CviAII CATG 1 cut(s) 235
CviJI RGCY 9 cut(s) 22, 36, 61, 76, 99, 158, 224, 244, 260
CviKI_1 RGCY 9 cut(s) 22, 36, 61, 76, 99, 158, 224, 244, 260
DpnI GATC 2 cut(s) 49, 230
DpnII GATC 2 cut(s) 47, 228
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 191, 236
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 9, 62, 242, 261, 264
Fsp4HI GCNGC 5 cut(s) 9, 62, 242, 261, 264
FspBI CTAG 1 cut(s) 267
GluI GCNGC 5 cut(s) 9, 62, 242, 261, 264
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 1 cut(s) 238
HinfI GANTC 2 cut(s) 125, 175
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 4 cut(s) 40, 47, 80, 130
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 11, 167, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 230
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 2 cut(s) 47, 228
LmnI GCTCC 2 cut(s) 41, 81
LpnPI CCDG 2 cut(s) 8, 192
Lsp1109I GCAGC 4 cut(s) 48, 247, 250, 253
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 49, 230
MboI GATC 2 cut(s) 47, 228
MboII GAAGA 2 cut(s) 147, 266
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 1 cut(s) 148
MseI TTAA 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 164, 230
NcoI CCATGG 1 cut(s) 234
NdeII GATC 2 cut(s) 47, 228
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 10, 63, 243, 262, 265
Ple19I CGATCG 1 cut(s) 231
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 5 cut(s) 9, 62, 242, 261, 264
Sau3AI GATC 2 cut(s) 47, 228
SchI GAGTC 1 cut(s) 184
SetI ASST 8 cut(s) 38, 63, 78, 87, 101, 226, 246, 262
SfaNI GCATC 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 113, 245
SmoI CTYRAG 2 cut(s) 113, 245
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 227
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 5 cut(s) 8, 61, 241, 260, 263
Tsp45I GTSAC 1 cut(s) 139
TspRI CASTG 1 cut(s) 169
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.