Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Forward (+)

15430837 .. 15433668

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAGGAAACTTTATCACCAAGGGTCTCTTCGTTCTACAGCACATCTGTCTGGTTTCACTCATACAATGCCAATACTTTCTGTCAAAATGATACATCCTGCATTCAAGGCCTTAAATCTTTGAGTCCCATATTTGACATGAAGACATTAGGCTTCTGCATTTCTGTGTTTCATGCAATCCTAATAGTTAAGATCAAGGGCATACAAGGACTGCAGATCCTATGTCATGCAGTCAAGTGGGATTGCTTTGAGGAGGAAACGAAAGAGAGGTCCTACTACGCTGGAGTCCTTCTTCTTGGCTATGATGTAGGTGTGATGAGTGGGGCAATCATATTTATTCAAGAAGATTTGAAGATAACCGAAGTACAGGAAGAAATTCTTGTTGGGATTTTGAGCATTGTTTCTATTTTTGGTAGTTTAGCTGGTGGTAGAACATCGTACATTATAGGTAGAAAGTGGACAATGGCATTAGTCGCTCTTGTCTTTCAAACAGTGCTTGTAATGACACTTGCTCCTTCATTTGAAGTGCTTGATGATTGGAAGACTCTTGGCCGGCGTTGGGATTGGGTTTGGTGTCATGATTGCCCGGTTTATATTGCCGAGATATCACCCACCATTGCCGAGGCTCACTCACCTCATTTCCTGAAATTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

218

Amino Acids

24.6

Weight (kDa)

5.65

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	95 - 177	6.1e-07	Sugar (and other) transporter
MFS_1	PF07690	95 - 173	1.7e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	655
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	2 cut(s)	375, 647
AfaI	GTAC	2 cut(s)	366, 440
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	107, 341, 352, 488, 524
AjuI	GAANNNNNNNTTGG	4 cut(s)	13, 45, 366, 398
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	109, 550
ApoI	RAATTY	2 cut(s)	375, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	9, 600, 624
AvaII	GGWCC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	149, 548
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	2 cut(s)	37, 212
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	587
BpiI	GAAGAC	2 cut(s)	149, 548
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	20, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	20, 621
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	111, 552
BsiSI	CCGG	2 cut(s)	553, 587
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	111, 552
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	192, 216
BspANI	GGCC	2 cut(s)	111, 552
BspHI	TCATGA	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	20, 621
BssMI	GATC	2 cut(s)	192, 216
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	195, 219
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	192, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 473
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	37, 212
BstV2I	GAAGAC	2 cut(s)	149, 548
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	111, 552
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	365, 439
CviAII	CATG	4 cut(s)	139, 173, 227, 578
CviJI	RGCY	6 cut(s)	111, 153, 300, 422, 552, 626
CviKI_1	RGCY	6 cut(s)	111, 153, 300, 422, 552, 626
CviQI	GTAC	2 cut(s)	365, 439
DpnI	GATC	2 cut(s)	194, 218
DpnII	GATC	2 cut(s)	192, 216
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	4 cut(s)	142, 176, 230, 581
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 363, 395
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	4 cut(s)	138, 172, 226, 577
FokI	GGATG	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	111, 552
HapII	CCGG	2 cut(s)	553, 587
Hin1II	CATG	4 cut(s)	142, 176, 230, 581
HinfI	GANTC	3 cut(s)	124, 285, 544
HpaII	CCGG	2 cut(s)	553, 587
HphI	GGTGA	3 cut(s)	9, 600, 624
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	341, 578, 643
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	299, 525
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	4, 102, 159, 176, 214, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 473
Hsp92II	CATG	4 cut(s)	142, 176, 230, 581
KroI	GCCGGC	1 cut(s)	552
KroNI	GCCGGC	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	192, 216
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	7 cut(s)	37, 112, 267, 353, 408, 566, 600
MalI	GATC	2 cut(s)	194, 218
MboI	GATC	2 cut(s)	192, 216
MboII	GAAGA	7 cut(s)	21, 154, 284, 356, 364, 383, 553
MflI	RGATCY	1 cut(s)	216
MluCI	AATT	2 cut(s)	375, 647
MlyI	GAGTC	3 cut(s)	133, 294, 538
MnlI	CCTC	5 cut(s)	244, 247, 261, 616, 645
MroNI	GCCGGC	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	114, 189
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	2 cut(s)	553, 587
MspR9I	CCNGG	1 cut(s)	587
Mva1269I	GAATGC	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	108, 473
NaeI	GCCGGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	2 cut(s)	192, 216
NgoMIV	GCCGGC	1 cut(s)	552
NlaIII	CATG	4 cut(s)	142, 176, 230, 581
NmeAIII	GCCGAG	2 cut(s)	625, 646
PagI	TCATGA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	111
PctI	GAATGC	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	375
PleI	GAGTC	3 cut(s)	132, 293, 538
PpsI	GAGTC	3 cut(s)	132, 293, 538
PpuMI	RGGWCCY	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	655
Psp5II	RGGWCCY	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	270
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	366, 440
RsaNI	GTAC	2 cut(s)	365, 439
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	114, 189
Sau3AI	GATC	2 cut(s)	192, 216
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	3 cut(s)	133, 294, 538
ScrFI	CCNGG	1 cut(s)	587
SetI	ASST	5 cut(s)	272, 313, 424, 451, 637
SfcI	CTRYAG	2 cut(s)	37, 212
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	375, 647
SseBI	AGGCCT	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	493
TasI	AATT	2 cut(s)	375, 647
TatI	WGTACW	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	114, 189
Tru9I	TTAA	2 cut(s)	114, 189
TscAI	CASTG	1 cut(s)	498
TspDTI	ATGAA	3 cut(s)	155, 161, 507
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	2 cut(s)	375, 647
XmnI	GAANNNNTTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.