Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Forward (+)

62700579 .. 62700971

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACGACATCCCGGCAGGCGTACAAGATCGACCAGAATAATCCCGGGTCGGATTTCGCCGGAGAGACAGTGGCGGCCGCGGCCTTAGTGTTCAAGAAAACAAATCCGCATTATGCCCACCTTCTCCTACATCACGCCCAACAGTTGTTCGAGTATGGGGACAAGTATAGGGGGAAGTATGATGAGGAGGAGAGGATGGGAGTGGTGAAGAGCTACTATGCGTCAGTGAGTGGTTTCAAGGATGAGTTGTTGTGGGCAGCTTTGTGGTTATACGAGGCCACCGACAATGAGGAGTATTTGAGGTATGTAGTTAACAAAGCTGAAAACTTTGGAGGCATTGGTTGGGCAAGTGGTTGCTCTTTATTTAAGATCAAACCTCAAGGAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

130

Amino Acids

14.74

Weight (kDa)

6.06

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 108	2.6e-33	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	74, 78, 80, 107
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	94, 238
AluBI	AGCT	3 cut(s)	213, 260, 320
AluI	AGCT	3 cut(s)	213, 260, 320
Alw26I	GTCTC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	3 cut(s)	75, 81, 276
ApeKI	GCWGC	1 cut(s)	257
AsuC2I	CCSGG	3 cut(s)	13, 45, 46
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	190
BcnI	CCSGG	3 cut(s)	13, 45, 46
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	75, 78, 81, 258
BlsI	GCNGC	4 cut(s)	76, 79, 82, 259
Bme1390I	CCNGG	3 cut(s)	13, 45, 46
BmeT110I	CYCGRG	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	13, 45, 46
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	3 cut(s)	13, 45, 46
BsaJI	CCNNGG	2 cut(s)	44, 78
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
BseDI	CCNNGG	2 cut(s)	44, 78
BseGI	GGATG	3 cut(s)	8, 201, 247
BseRI	GAGGAG	3 cut(s)	200, 203, 305
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	77, 83, 278
BsiEI	CGRYCG	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	13, 45, 60
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	77, 83, 278
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	27, 369
BspACI	CCGC	4 cut(s)	74, 78, 80, 107
BspANI	GGCC	3 cut(s)	77, 83, 278
BspFNI	CGCG	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	44, 78
BssMI	GATC	2 cut(s)	27, 369
Bst4CI	ACNGT	2 cut(s)	70, 144
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	8, 201, 247
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	30, 372
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	27, 369
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	11, 43, 44
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	269
BstZI	CGGCCG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	77, 83, 278
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	8, 201, 247
BtsIMutI	CAGTG	2 cut(s)	75, 231
Cac8I	GCNNGC	1 cut(s)	18
CciNI	GCGGCCGC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	81
Cfr9I	CCCGGG	1 cut(s)	44
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	6 cut(s)	77, 83, 213, 260, 278, 320
CviKI_1	RGCY	6 cut(s)	77, 83, 213, 260, 278, 320
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	2 cut(s)	29, 371
DpnII	GATC	2 cut(s)	27, 369
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	44
FaeI	CATG	1 cut(s)	391
FaiI	YATR	8 cut(s)	114, 156, 168, 180, 219, 271, 306, 389
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	75, 78, 81, 258
FokI	GGATG	2 cut(s)	208, 254
Fsp4HI	GCNGC	4 cut(s)	75, 78, 81, 258
GluI	GCNGC	4 cut(s)	75, 78, 81, 258
HaeIII	GGCC	3 cut(s)	77, 83, 278
HapII	CCGG	3 cut(s)	13, 45, 60
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	13, 45, 60
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	70, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	313
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	27, 369
LguI	GCTCTTC	1 cut(s)	203
LpnPI	CCDG	5 cut(s)	2, 26, 47, 58, 73
Lsp1109I	GCAGC	1 cut(s)	269
MalI	GATC	2 cut(s)	29, 371
MboI	GATC	2 cut(s)	27, 369
MboII	GAAGA	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	8 cut(s)	178, 181, 186, 268, 283, 294, 326, 387
MseI	TTAA	2 cut(s)	312, 366
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	3 cut(s)	13, 45, 60
MspR9I	CCNGG	3 cut(s)	13, 45, 46
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	3 cut(s)	13, 45, 46
NdeII	GATC	2 cut(s)	27, 369
NlaIII	CATG	1 cut(s)	391
NotI	GCGGCCGC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	76, 79, 82, 259
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacII	CCGCGG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	312, 366
SatI	GCNGC	4 cut(s)	75, 78, 81, 258
Sau3AI	GATC	2 cut(s)	27, 369
ScrFI	CCNGG	3 cut(s)	13, 45, 46
SetI	ASST	6 cut(s)	123, 215, 262, 305, 322, 379
Sfr303I	CCGCGG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	81
SmaI	CCCGGG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SsiI	CCGC	4 cut(s)	74, 78, 80, 107
StyD4I	CCNGG	3 cut(s)	11, 43, 44
TaaI	ACNGT	2 cut(s)	70, 144
TaqI	TCGA	2 cut(s)	30, 150
TauI	GCSGC	3 cut(s)	77, 80, 83
Tru1I	TTAA	2 cut(s)	312, 366
Tru9I	TTAA	2 cut(s)	312, 366
TscAI	CASTG	2 cut(s)	75, 231
TseI	GCWGC	1 cut(s)	257
TspMI	CCCGGG	1 cut(s)	44
TspRI	CASTG	2 cut(s)	75, 231
XceI	RCATGY	1 cut(s)	391
XmaI	CCCGGG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.