Rroxscaffold_3G00226520
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007563
Physical Location & Seq
Reverse (-)
10075406 .. 10080270
4865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226520.1

Sequence Viewer

Length: 672 bp
ATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGTTGAAGAGAAGAAGGAGAAGTACTCTATTGAAGGGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGATCATGCCACATTTATTAAAATGATGGATAAGCTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGATTATTCCAGTTTTTCTCTTCTCTCTCACTTCGACTCGGTCACCATCCTTTTCCCCTCGCTTGCTCTCCTGCCGGTGGAGATCATGGTCTCCGGCCACCACTTCTTGCCACCTCCGCCATTGCGTGAACCAGCTTCAATTCCGAGCAAGACCTAAGCTCAACACGGCTTTGCATCAACTTCGGCCTCCACACGCTCCCTTCAAGTACGAAGTGCAGCTGCTCCTCCAAGATCACCGAGTCTCCAATCGGTCCTCAACTTCATCACCTCGGTGCCTTAACCCGAGCCGATGGTTAAGATCGCCAAAACCTGCAGCTTCCAAGGTCGGACGTCGCCTTTTTAGCTCTGCTGGAATCGAGTCAACGTTTCCAGCCATGTCGAATCGATACCACCGCTGGACGAGGACCGGGCCAACCAGGTCACGGCGAAGCAAATCCGGTCCTTACCGCTTGGAACTTGACGCCGCACTACTAATTCGAAACGCTAGCTGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

223

Amino Acids

25.88

Weight (kDa)

10.8

Isoelectric Point (pI)

79.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 508
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 447
AciI CCGC 4 cut(s) 292, 568, 622, 639
AclI AACGTT 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 505, 636
AfaI GTAC 2 cut(s) 59, 383
AfiI CCNNNNNNNGG 2 cut(s) 252, 597
AgsI TTSAA 5 cut(s) 41, 68, 152, 314, 379
AjnI CCWGG 1 cut(s) 590
AleI CACNNNNGTG 1 cut(s) 445
AluBI AGCT 9 cut(s) 13, 139, 310, 334, 394, 491, 519, 663, 669
AluI AGCT 9 cut(s) 13, 139, 310, 334, 394, 491, 519, 663, 669
Alw26I GTCTC 3 cut(s) 93, 270, 421
Ama87I CYCGRG 1 cut(s) 457
AoxI GGCC 3 cut(s) 270, 359, 584
ApeKI GCWGC 5 cut(s) 391, 394, 488, 663, 666
AspS9I GGNCC 4 cut(s) 426, 579, 584, 614
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 210, 401, 432
AsuII TTCGAA 1 cut(s) 652
AsuNHI GCTAGC 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 3 cut(s) 426, 579, 614
BanI GGYRCC 1 cut(s) 447
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BbvI GCAGC 4 cut(s) 381, 403, 500, 650
BccI CCATC 3 cut(s) 124, 229, 459
BceAI ACGGC 2 cut(s) 357, 614
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 592
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 3 cut(s) 93, 270, 421
BfaI CTAG 2 cut(s) 660, 670
BfmI CTRYAG 2 cut(s) 486, 664
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 6 cut(s) 392, 395, 489, 639, 664, 667
BlsI GCNGC 6 cut(s) 393, 396, 490, 640, 665, 668
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 583, 592
Bme18I GGWCC 3 cut(s) 426, 579, 614
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 426, 579, 584, 614
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 2 cut(s) 583, 592
BmsI GCATC 1 cut(s) 358
BmtI GCTAGC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 44, 76
Bpu10I CCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 583
Bsa29I ATCGAT 1 cut(s) 559
BsaHI GRCGYC 2 cut(s) 505, 636
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 443, 495
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 597
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 443, 495
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 252, 597
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 172, 389
BseXI GCAGC 4 cut(s) 381, 403, 500, 650
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 3 cut(s) 272, 361, 586
BshNI GGYRCC 1 cut(s) 447
BshVI ATCGAT 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 4 cut(s) 250, 269, 582, 612
BslI CCNNNNNNNGG 2 cut(s) 252, 597
BsmAI GTCTC 3 cut(s) 93, 270, 421
BsnI GGCC 3 cut(s) 272, 361, 586
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 457
Bsp119I TTCGAA 1 cut(s) 652
Bsp143I GATC 4 cut(s) 106, 257, 406, 473
BspACI CCGC 4 cut(s) 292, 568, 622, 639
BspANI GGCC 3 cut(s) 272, 361, 586
BspDI ATCGAT 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 449
BspMAI CTGCAG 2 cut(s) 490, 668
BspMI ACCTGC 1 cut(s) 493
BspOI GCTAGC 1 cut(s) 663
BspT104I TTCGAA 1 cut(s) 652
BspT107I GGYRCC 1 cut(s) 447
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 443, 495
BssMI GATC 4 cut(s) 106, 257, 406, 473
BssNI GRCGYC 2 cut(s) 505, 636
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 592
Bst6I CTCTTC 2 cut(s) 36, 200
BstACI GRCGYC 2 cut(s) 505, 636
BstBI TTCGAA 1 cut(s) 652
BstC8I GCNNGC 2 cut(s) 239, 661
BstDEI CTNAG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 216
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 4 cut(s) 109, 260, 409, 476
BstMAI GTCTC 3 cut(s) 93, 270, 421
BstMBI GATC 4 cut(s) 106, 257, 406, 473
BstMWI GCNNNNNNNGC 2 cut(s) 291, 516
BstNI CCWGG 1 cut(s) 592
BstPI GGTNACC 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 581, 590
BstSFI CTRYAG 2 cut(s) 486, 664
BstV1I GCAGC 4 cut(s) 381, 403, 500, 650
Bsu15I ATCGAT 1 cut(s) 559
BsuRI GGCC 3 cut(s) 272, 361, 586
BsuTUI ATCGAT 1 cut(s) 559
BtsCI GGATG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 239, 661
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 4 cut(s) 426, 579, 584, 614
ClaI ATCGAT 1 cut(s) 559
CseI GACGC 1 cut(s) 644
CsiI ACCWGGT 1 cut(s) 590
Csp6I GTAC 2 cut(s) 58, 382
CviAII CATG 4 cut(s) 110, 175, 261, 550
CviQI GTAC 2 cut(s) 58, 382
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 108, 259, 408, 475
DpnII GATC 4 cut(s) 106, 257, 406, 473
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 36, 200
EarI CTCTTC 2 cut(s) 36, 200
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 3 cut(s) 426, 579, 614
Eco88I CYCGRG 1 cut(s) 457
Eco91I GGTNACC 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 4 cut(s) 113, 178, 264, 553
FaiI YATR 5 cut(s) 111, 143, 176, 262, 551
FatI CATG 4 cut(s) 109, 174, 260, 549
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 6 cut(s) 392, 395, 489, 639, 664, 667
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 6 cut(s) 392, 395, 489, 639, 664, 667
FspBI CTAG 2 cut(s) 660, 670
GluI GCNGC 6 cut(s) 392, 395, 489, 639, 664, 667
HaeIII GGCC 3 cut(s) 272, 361, 586
HapII CCGG 4 cut(s) 250, 269, 582, 612
HgaI GACGC 1 cut(s) 644
Hin1I GRCGYC 2 cut(s) 505, 636
Hin1II CATG 4 cut(s) 113, 178, 264, 553
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 5 cut(s) 211, 414, 528, 533, 556
HpaII CCGG 4 cut(s) 250, 269, 582, 612
HphI GGTGA 3 cut(s) 210, 401, 432
Hpy166II GTNNAC 2 cut(s) 304, 537
Hpy188I TCNGA 2 cut(s) 320, 503
Hpy8I GTNNAC 2 cut(s) 304, 537
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 3 cut(s) 43, 62, 385
HpyCH4IV ACGT 2 cut(s) 505, 539
HpyCH4V TGCA 5 cut(s) 79, 349, 391, 488, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 516
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 505, 539
Hsp92I GRCGYC 2 cut(s) 505, 636
Hsp92II CATG 4 cut(s) 113, 178, 264, 553
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 106, 257, 406, 473
LmnI GCTCC 2 cut(s) 376, 402
Lsp1109I GCAGC 4 cut(s) 381, 403, 500, 650
LweI GCATC 1 cut(s) 358
MabI ACCWGGT 1 cut(s) 590
MaeI CTAG 2 cut(s) 660, 670
MaeII ACGT 2 cut(s) 505, 539
MaeIII GTNAC 2 cut(s) 216, 594
MalI GATC 4 cut(s) 108, 259, 408, 475
MboI GATC 4 cut(s) 106, 257, 406, 473
MboII GAAGA 3 cut(s) 53, 58, 187
MluCI AATT 3 cut(s) 81, 314, 648
MlyI GAGTC 3 cut(s) 205, 423, 542
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 9 cut(s) 150, 153, 243, 299, 372, 410, 439, 453, 570
MseI TTAA 3 cut(s) 123, 453, 470
MslI CAYNNNNRTG 1 cut(s) 445
MspA1I CMGCKG 2 cut(s) 394, 570
MspI CCGG 4 cut(s) 250, 269, 582, 612
MspR9I CCNGG 2 cut(s) 583, 592
MvaI CCWGG 1 cut(s) 592
MwoI GCNNNNNNNGC 2 cut(s) 291, 516
NciI CCSGG 1 cut(s) 583
NdeII GATC 4 cut(s) 106, 257, 406, 473
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 4 cut(s) 113, 178, 264, 553
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 216, 594
NspV TTCGAA 1 cut(s) 652
OliI CACNNNNGTG 1 cut(s) 445
PfeI GAWTC 2 cut(s) 528, 556
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 6 cut(s) 393, 396, 490, 640, 665, 668
PleI GAGTC 3 cut(s) 205, 422, 541
PpsI GAGTC 3 cut(s) 205, 422, 541
Psp1406I AACGTT 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 590
PspEI GGTNACC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 4 cut(s) 426, 579, 584, 614
PstI CTGCAG 2 cut(s) 490, 668
PsyI GACNNNGTC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 59, 383
RsaNI GTAC 2 cut(s) 58, 382
RseI CAYNNNNRTG 1 cut(s) 445
SaqAI TTAA 3 cut(s) 123, 453, 470
SatI GCNGC 6 cut(s) 392, 395, 489, 639, 664, 667
Sau3AI GATC 4 cut(s) 106, 257, 406, 473
Sau96I GGNCC 4 cut(s) 426, 579, 584, 614
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 3 cut(s) 205, 423, 542
ScrFI CCNGG 2 cut(s) 583, 592
SexAI ACCWGGT 1 cut(s) 590
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 2 cut(s) 486, 664
SfuI TTCGAA 1 cut(s) 652
SinI GGWCC 3 cut(s) 426, 579, 614
SmiMI CAYNNNNRTG 1 cut(s) 445
Sse9I AATT 3 cut(s) 81, 314, 648
SsiI CCGC 4 cut(s) 292, 568, 622, 639
SspMI CTAG 2 cut(s) 660, 670
StyD4I CCNGG 2 cut(s) 581, 590
StyI CCWWGG 1 cut(s) 495
TaiI ACGT 2 cut(s) 508, 542
TaqI TCGA 5 cut(s) 209, 531, 554, 559, 652
TaqII GACCGA 2 cut(s) 204, 414
TasI AATT 3 cut(s) 81, 314, 648
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 2 cut(s) 528, 556
Tru1I TTAA 3 cut(s) 123, 453, 470
Tru9I TTAA 3 cut(s) 123, 453, 470
TseFI GTSAC 2 cut(s) 216, 594
TseI GCWGC 5 cut(s) 391, 394, 488, 663, 666
Tsp45I GTSAC 2 cut(s) 216, 594
TspDTI ATGAA 2 cut(s) 17, 426
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 3 cut(s) 426, 579, 614
XspI CTAG 2 cut(s) 660, 670
ZraI GACGTC 1 cut(s) 506
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.