Rroxscaffold_6G00390570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007563
Physical Location & Seq
Forward (+)
5843289 .. 5849376
6088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390570.1

Sequence Viewer

Length: 339 bp
ATGGACCCAAAACTTTATTTTAGTAAAATCAAAGAGGAATGCGCCAAGTCGGGCCATGTGCCTCCTCTGTACGCTCCCCGACCACATGCTCAAAACCTGCACACTATTGTAGGCGTGAGCTTTCGTCCTCGCATGCCCGTAAGGGCCGACCCAACTATGCTAGAATTTCCGGGTACGGTTGGGAATCGTACCCGTGTTTTCTTTATTCACCGGACTTATGGGGAAGCCTTACCGATTTTCGATTTTGGTGGCTGGAAATCGATGGAGGTTGAGAGGCAGCAGCGTCGCAGCCTTGGGTGGTCGCGGGTGGAGGTCGGCGGTGGTGCATGTCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

10.01

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 304
AciI CCGC 2 cut(s) 304, 318
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 3 cut(s) 71, 175, 190
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
AoxI GGCC 2 cut(s) 52, 144
ApeKI GCWGC 3 cut(s) 277, 280, 288
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 4, 52, 144
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 289, 292, 300
BccI CCATC 2 cut(s) 256, 327
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 1 cut(s) 171
BfaI CTAG 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 3 cut(s) 278, 281, 289
BlsI GCNGC 3 cut(s) 279, 282, 290
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 3 cut(s) 4, 52, 144
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 289, 292, 300
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 54, 146
BshVI ATCGAT 1 cut(s) 260
BsiSI CCGG 2 cut(s) 170, 211
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 2 cut(s) 54, 146
BspACI CCGC 2 cut(s) 304, 318
BspANI GGCC 2 cut(s) 54, 146
BspDI ATCGAT 1 cut(s) 260
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 134
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 44
BstNSI RCATGY 3 cut(s) 89, 136, 330
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 3 cut(s) 289, 292, 300
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 2 cut(s) 54, 146
BsuTUI ATCGAT 1 cut(s) 260
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 4, 52, 144
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 70, 174, 189
CviAII CATG 4 cut(s) 56, 86, 133, 327
CviJI RGCY 6 cut(s) 54, 120, 146, 227, 252, 291
CviKI_1 RGCY 6 cut(s) 54, 120, 146, 227, 252, 291
CviQI GTAC 3 cut(s) 70, 174, 189
Eco130I CCWWGG 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 4 cut(s) 59, 89, 136, 330
FaiI YATR 6 cut(s) 57, 87, 134, 158, 219, 328
FatI CATG 4 cut(s) 55, 85, 132, 326
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 278, 281, 289
Fsp4HI GCNGC 3 cut(s) 278, 281, 289
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 278, 281, 289
HaeIII GGCC 2 cut(s) 54, 146
HapII CCGG 2 cut(s) 170, 211
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 44
Hin1II CATG 4 cut(s) 59, 89, 136, 330
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 170, 211
HphI GGTGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 100, 326
Hsp92II CATG 4 cut(s) 59, 89, 136, 330
HspAI GCGC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 110, 183, 224, 238
Lsp1109I GCAGC 3 cut(s) 289, 292, 300
MaeI CTAG 1 cut(s) 161
MluCI AATT 1 cut(s) 164
MnlI CCTC 7 cut(s) 28, 72, 75, 138, 259, 267, 304
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 2 cut(s) 170, 211
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 44
MvnI CGCG 1 cut(s) 304
NciI CCSGG 1 cut(s) 171
NlaIII CATG 4 cut(s) 59, 89, 136, 330
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 3 cut(s) 89, 136, 330
PaeI GCATGC 1 cut(s) 136
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 279, 282, 290
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 4, 52, 144
RsaI GTAC 3 cut(s) 71, 175, 190
RsaNI GTAC 3 cut(s) 70, 174, 189
RseI CAYNNNNRTG 1 cut(s) 331
SatI GCNGC 3 cut(s) 278, 281, 289
Sau96I GGNCC 3 cut(s) 4, 52, 144
ScrFI CCNGG 1 cut(s) 171
SetI ASST 4 cut(s) 99, 122, 270, 315
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 331
SphI GCATGC 1 cut(s) 136
Sse9I AATT 1 cut(s) 164
SsiI CCGC 2 cut(s) 304, 318
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 240, 260, 331
TasI AATT 1 cut(s) 164
TfiI GAWTC 1 cut(s) 184
TseI GCWGC 3 cut(s) 277, 280, 288
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 164
XceI RCATGY 3 cut(s) 89, 136, 330
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.