Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

84038322 .. 84038956

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCGGCAAAGATTGTGAAGCGGTGGAATGTGAAGATCATCTCGATTAGCAAGAATAAGCGACACCAAGATAGAGCTGCGGCATTGGAGGTGTGGGATCGGCTAGAAGAGTTTGTGCGGTCACGGTCACATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030880 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034402 GO:0034622 GO:0034641 GO:0034968 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065003 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC73_C CDC73_N

Protein Analysis

57

Amino Acids

6.84

Weight (kDa)

9.81

Isoelectric Point (pI)

69.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC73_C	PF05179	2 - 50	1.2e-11	RNA pol II accessory factor, Cdc73 family, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	16, 58, 116, 154
AclWI	GGATC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
BseXI	GCAGC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	72, 133
BspACI	CCGC	4 cut(s)	16, 58, 116, 154
BspPI	GGATC	1 cut(s)	141
BssMI	GATC	2 cut(s)	72, 133
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	75, 136
BstMBI	GATC	2 cut(s)	72, 133
BstV1I	GCAGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	2 cut(s)	113, 139
CviKI_1	RGCY	2 cut(s)	113, 139
DpnI	GATC	2 cut(s)	74, 135
DpnII	GATC	2 cut(s)	72, 133
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	114, 117
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	114, 117
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	79, 171
HpyCH4III	ACNGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	72, 133
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	156, 162
MalI	GATC	2 cut(s)	74, 135
MboI	GATC	2 cut(s)	72, 133
MboII	GAAGA	3 cut(s)	35, 82, 155
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	1 cut(s)	118
NdeII	GATC	2 cut(s)	72, 133
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	156, 162
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	2 cut(s)	72, 133
SchI	GAGTC	1 cut(s)	47
SetI	ASST	2 cut(s)	115, 129
SgeI	CNNG	5 cut(s)	25, 91, 100, 116, 152
SsiI	CCGC	4 cut(s)	16, 58, 116, 154
SspMI	CTAG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	80
TauI	GCSGC	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	156, 162
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	156, 162
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.