Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

34619867 .. 34620582

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCAGCGGTAGAAACCGGAGGTAGCTGTCGAAGCTTGTTGCAACTGTCCAAAACTGGATGCAGCTACCGAACCTTGATGGCGGCAACTCGATTTTGTGGTGAACGAGAACCGACAAACGATGGTGAAGTATGGACCACCGAGCCGATCACGGAAATTCCTCACCGCTTGTTGGCTGGTGGTAGAACAGTAGACATATTAGGTAGAAAGTGGACAATGACATTAGCTGCTCTTGTCTTTCAAACAGGTGCAGTCGTATTGACACTTGCTCCTTCATTTGATGTCTTGATGATTGGAAGACTCTTGGCGAGGAATTGGGATAGGAACGAAGTTTGGATGCGGGACCTTAGTACGAGGCCATCACCGCATCAAAGAGTCCTGTTACGTGACTCGATTAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

9.41

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	5 cut(s)	8, 83, 166, 340, 365
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	4 cut(s)	27, 36, 66, 227
AluI	AGCT	4 cut(s)	27, 36, 66, 227
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	5, 63, 227
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	135, 343
AsuHPI	GGTGA	4 cut(s)	113, 137, 155, 354
AvaII	GGWCC	2 cut(s)	135, 343
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	17, 75, 214
BccI	CCATC	3 cut(s)	73, 116, 367
BisI	GCNGC	4 cut(s)	6, 64, 84, 228
BlsI	GCNGC	4 cut(s)	7, 65, 85, 229
Bme18I	GGWCC	2 cut(s)	135, 343
BmgT120I	GGNCC	2 cut(s)	135, 343
BmiI	GGNNCC	1 cut(s)	344
BmsI	GCATC	3 cut(s)	50, 327, 376
BpiI	GAAGAC	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	65, 342
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	17, 75, 214
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	5 cut(s)	8, 83, 166, 340, 365
BspANI	GGCC	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	48, 190
BstBAI	YACGTR	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	65, 342
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 364
BstV1I	GCAGC	3 cut(s)	17, 75, 214
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	65, 342
Cfr13I	GGNCC	2 cut(s)	135, 343
Csp6I	GTAC	1 cut(s)	351
CviJI	RGCY	7 cut(s)	27, 36, 66, 145, 176, 227, 358
CviKI_1	RGCY	7 cut(s)	27, 36, 66, 145, 176, 227, 358
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	135, 343
EcoO109I	RGGNCCY	1 cut(s)	343
FaiI	YATR	2 cut(s)	133, 197
FaqI	GGGAC	1 cut(s)	356
FauI	CCCGC	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	6, 64, 84, 228
FokI	GGATG	2 cut(s)	72, 349
Fsp4HI	GCNGC	4 cut(s)	6, 64, 84, 228
GluI	GCNGC	4 cut(s)	6, 64, 84, 228
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	300, 375, 389
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	4 cut(s)	113, 137, 155, 354
Hpy166II	GTNNAC	3 cut(s)	104, 193, 213
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	3 cut(s)	104, 193, 213
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	48, 190
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	3 cut(s)	43, 63, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 364
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	31, 42, 162, 231, 392
Lsp1109I	GCAGC	3 cut(s)	17, 75, 214
LweI	GCATC	3 cut(s)	50, 327, 376
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	2 cut(s)	381, 386
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	309
MluCI	AATT	2 cut(s)	156, 313
MlyI	GAGTC	3 cut(s)	294, 383, 384
MnlI	CCTC	4 cut(s)	14, 171, 303, 348
MseI	TTAA	2 cut(s)	396, 403
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	33, 364
NdeII	GATC	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	7, 65, 85, 229
PleI	GAGTC	3 cut(s)	294, 383, 383
PpsI	GAGTC	3 cut(s)	294, 383, 383
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	135, 343
PspPPI	RGGWCCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	396, 403
SatI	GCNGC	4 cut(s)	6, 64, 84, 228
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	135, 343
SchI	GAGTC	3 cut(s)	294, 383, 384
SfaNI	GCATC	3 cut(s)	50, 327, 376
SinI	GGWCC	2 cut(s)	135, 343
Sse9I	AATT	2 cut(s)	156, 313
SsiI	CCGC	5 cut(s)	8, 83, 166, 340, 365
TaaI	ACNGT	2 cut(s)	48, 190
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	31, 91, 392
TasI	AATT	2 cut(s)	156, 313
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	396, 403
Tru9I	TTAA	2 cut(s)	396, 403
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	3 cut(s)	5, 63, 227
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	135, 343
XapI	RAATTY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.