Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Reverse (-)

55015263 .. 55021396

Gene Structure 6134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTTATTAATTTGTTTCACTGCTGGCAGGGGCTTGCAGCCCATGTTTTCTTTCTCTTCCTCGCGCAGGCTCGCAAACCACGTTGGCCGGTCAATAAAGTAGAGACCACTAGGCCAACAATTGAGGTGACAGGAGATCTTGGGAAAATGGTTGCTCTGCAAAGAAATTTAAGCAAGTTTGGGATCGAGAAATTGCCGAACCGGAAAGATAGCTTTGAAGAGAGAAAACTTGGGTACATTGAAGCAGGAGCTCTTGAGGAGAAGTTAATGTCGTTGCTTGGTGTTGAAGGACATGCGGGAAAATGGAGTGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005948 GO:0006082 GO:0006520 GO:0006549 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009099 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0032991 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

9.46

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	218, 242, 287
AluBI	AGCT	2 cut(s)	213, 251
AluI	AGCT	2 cut(s)	213, 251
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	86, 113
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	88, 115
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	89, 202
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	88, 115
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	136, 183
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	88, 115
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	2 cut(s)	136, 183
Bst6I	CTCTTC	2 cut(s)	62, 213
BstC8I	GCNNGC	4 cut(s)	26, 36, 69, 73
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	139, 186
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	136, 183
BstNSI	RCATGY	1 cut(s)	296
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	88, 115
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	26, 36, 69, 73
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	44, 293
CviJI	RGCY	8 cut(s)	34, 41, 71, 88, 115, 213, 251, 314
CviKI_1	RGCY	8 cut(s)	34, 41, 71, 88, 115, 213, 251, 314
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	138, 185
DpnII	GATC	2 cut(s)	136, 183
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	62, 213
EarI	CTCTTC	2 cut(s)	62, 213
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	2 cut(s)	47, 296
FaiI	YATR	2 cut(s)	45, 294
FatI	CATG	2 cut(s)	43, 292
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	88, 115
HapII	CCGG	2 cut(s)	89, 202
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	47, 296
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HpaII	CCGG	2 cut(s)	89, 202
HphI	GGTGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	187, 254
HpyAV	CCTTC	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	38, 160
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	47, 296
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	136, 183
LmnI	GCTCC	2 cut(s)	248, 311
LpnPI	CCDG	7 cut(s)	10, 14, 53, 102, 117, 215, 231
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	138, 185
MboI	GATC	2 cut(s)	136, 183
MboII	GAAGA	2 cut(s)	49, 230
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	4 cut(s)	10, 120, 166, 191
MnlI	CCTC	3 cut(s)	71, 118, 250
MseI	TTAA	3 cut(s)	9, 170, 266
MspI	CCGG	2 cut(s)	89, 202
MunI	CAATTG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	65
NdeII	GATC	2 cut(s)	136, 183
NlaIII	CATG	2 cut(s)	47, 296
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	9, 170, 266
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	136, 183
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	4 cut(s)	85, 129, 215, 253
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	10, 120, 166, 191
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	253
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	10, 120, 166, 191
Tru1I	TTAA	3 cut(s)	9, 170, 266
Tru9I	TTAA	3 cut(s)	9, 170, 266
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	296
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.