Rroxscaffold_3G00238650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007563
Physical Location & Seq
Forward (+)
26862677 .. 26869658
6982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238650.1

Sequence Viewer

Length: 501 bp
ATGCAGCTACCGAACCTTGATGGCGCAACTCGATTTTGTGGTGAACGAGAACCGACAAACGATGGGGAAGTATGGACCACCGAGCCGATCACGGAAATTCCTCACTTGCTTGTTGCAAAGGCCACCGACGACTTCCTTTTCTCAAAGGAAATATTCTCTTGGTCCCCCACTTTTGCCTCTCGTTCGTTTTGGGGTTTTGTTCCACCGTTTCATCCGAGCGGAGAGCCAAGGGAACAGAGGAACAAGGGAGAGAAGAAGGAGAAAGAGGCTCGTGGAGGATCTGCGCAGCGATTGCTGAAAAGATGCTTTCCGAAACTCTCTCGGCGAGCGCATCAACTCCGCTTTCACTTGTCCCTGTTCTTTATCCACCTCATCGAAACCTCCAAGGCTTTGTCACCTAGCTCAGCCATGACTCCCGGCTCCGACCACCCTCTCGACCGGAAGTTCTCTCGGGTTTTAGGCGAACGAGCTCCCGGTGATGAACTTCGGAAGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.93

Weight (kDa)

9.46

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 2 cut(s) 219, 340
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 96
AluBI AGCT 3 cut(s) 7, 402, 470
AluI AGCT 3 cut(s) 7, 402, 470
Alw21I GWGCWC 1 cut(s) 472
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 4, 286
ApoI RAATTY 1 cut(s) 96
AspLEI GCGC 3 cut(s) 26, 286, 331
AspS9I GGNCC 2 cut(s) 75, 162
AsuC2I CCSGG 2 cut(s) 417, 474
AsuHPI GGTGA 3 cut(s) 53, 387, 488
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 2 cut(s) 75, 162
BanII GRGCYC 1 cut(s) 472
BauI CACGAG 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 16, 298
BccI CCATC 2 cut(s) 14, 56
BcnI CCSGG 2 cut(s) 417, 474
BfaI CTAG 1 cut(s) 399
BisI GCNGC 2 cut(s) 5, 287
BlpI GCTNAGC 1 cut(s) 403
BlsI GCNGC 2 cut(s) 6, 288
Bme1390I CCNGG 2 cut(s) 417, 474
Bme18I GGWCC 2 cut(s) 75, 162
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 75, 162
BmiI GGNNCC 2 cut(s) 164, 421
BmrFI CCNGG 2 cut(s) 417, 474
BmsI GCATC 2 cut(s) 293, 340
Bpu1102I GCTNAGC 1 cut(s) 403
BpuMI CCSGG 2 cut(s) 417, 474
BsaJI CCNNGG 2 cut(s) 227, 384
BsaWI WCCGGW 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 227, 384
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 16, 298
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 3 cut(s) 417, 439, 474
BslFI GGGAC 2 cut(s) 148, 337
BsmFI GGGAC 2 cut(s) 148, 337
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 2 cut(s) 87, 278
Bsp1720I GCTNAGC 1 cut(s) 403
BspACI CCGC 2 cut(s) 219, 340
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 164, 421
BspPI GGATC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 227, 384
BssMI GATC 2 cut(s) 87, 278
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 227, 384
Bst2BI CACGAG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 3 cut(s) 26, 286, 331
BstKTI GATC 2 cut(s) 90, 281
BstMBI GATC 2 cut(s) 87, 278
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 415, 472
BstV1I GCAGC 2 cut(s) 16, 298
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 3 cut(s) 26, 286, 331
Cfr13I GGNCC 2 cut(s) 75, 162
CviAII CATG 1 cut(s) 409
DdeI CTNAG 1 cut(s) 403
DpnI GATC 2 cut(s) 89, 280
DpnII GATC 2 cut(s) 87, 278
Ecl136II GAGCTC 1 cut(s) 470
Eco130I CCWWGG 2 cut(s) 227, 384
Eco24I GRGCYC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 75, 162
Eco53kI GAGCTC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 450
EcoICRI GAGCTC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 227, 384
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 2 cut(s) 227, 384
FaeI CATG 1 cut(s) 412
FaiI YATR 2 cut(s) 73, 410
FaqI GGGAC 2 cut(s) 148, 337
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 5, 287
FokI GGATG 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 5, 287
FspBI CTAG 1 cut(s) 399
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 3 cut(s) 25, 285, 330
GluI GCNGC 2 cut(s) 5, 287
HaeIII GGCC 1 cut(s) 122
HapII CCGG 3 cut(s) 417, 439, 474
HhaI GCGC 3 cut(s) 26, 286, 331
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 3 cut(s) 24, 284, 329
HinP1I GCGC 3 cut(s) 24, 284, 329
HinfI GANTC 1 cut(s) 412
HpaII CCGG 3 cut(s) 417, 439, 474
HphI GGTGA 3 cut(s) 53, 387, 488
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 4 cut(s) 216, 312, 424, 489
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 4, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 3 cut(s) 24, 284, 329
Kzo9I GATC 2 cut(s) 87, 278
LmnI GCTCC 2 cut(s) 425, 475
LpnPI CCDG 4 cut(s) 368, 430, 452, 487
Lsp1109I GCAGC 2 cut(s) 16, 298
LweI GCATC 2 cut(s) 293, 340
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 393
MalI GATC 2 cut(s) 89, 280
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 87, 278
MboII GAAGA 1 cut(s) 265
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 8 cut(s) 111, 187, 231, 259, 269, 380, 391, 441
MspI CCGG 3 cut(s) 417, 439, 474
MspR9I CCNGG 2 cut(s) 417, 474
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 417, 474
NdeII GATC 2 cut(s) 87, 278
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 164, 421
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 393
NsbI TGCGCA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 6, 288
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 164, 421
PspPI GGNCC 2 cut(s) 75, 162
PsuI RGATCY 1 cut(s) 278
SacI GAGCTC 1 cut(s) 472
SatI GCNGC 2 cut(s) 5, 287
Sau3AI GATC 2 cut(s) 87, 278
Sau96I GGNCC 2 cut(s) 75, 162
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 417, 474
SduI GDGCHC 1 cut(s) 472
SetI ASST 7 cut(s) 9, 18, 372, 383, 400, 404, 472
SfaNI GCATC 2 cut(s) 293, 340
SinI GGWCC 2 cut(s) 75, 162
Sse9I AATT 1 cut(s) 96
SsiI CCGC 2 cut(s) 219, 340
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 415, 472
StyI CCWWGG 2 cut(s) 227, 384
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 31, 375, 435
TasI AATT 1 cut(s) 96
TseFI GTSAC 1 cut(s) 393
TseI GCWGC 2 cut(s) 4, 286
Tsp45I GTSAC 1 cut(s) 393
TspDTI ATGAA 2 cut(s) 200, 495
TspGWI ACGGA 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 75, 162
XapI RAATTY 1 cut(s) 96
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.