Rroxscaffold_4G00286650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007563
Physical Location & Seq
Reverse (-)
7645568 .. 7662427
16860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286650.1

Sequence Viewer

Length: 480 bp
ATGGACCATGTTGCTGCTAACACGGCTATTGCACATGATAGCCAAGCGAGGTTCTCAAAACTTGGGAAGAGAGCGAACGAGTTTGAGCGGTGTTACTTGAGGAGAGGCGATCGCAATCAATCACTTCGAAGGAGAGAAGCTACCGGAGTAGCTTTGGTTGAAATCATTTATGATCCTCAACAACCTCAACATATGTCTAAATTAAGAGTGGGAACTGTGTCATTCGTGCGTGCGGTCGGTGGAGACGAGAATCGAAGCGAGCTTCGACCGCCATGGTACAGCTTGAGATGGAAGAAGCTGCTGCTAGTTGATAAGTTGAAGGGCGCTGGAAATGGGTGCCCGCACCGTTCGGCCGGTGCGACAAGCTCCGAGTTCGGATCAAACTGCAAGCTGCTTGTTGGTAAGCTCCGAAACCTTGTTGATTTAAGCTCGCTTGGTTCCCTTGAGTTGTTTTATTCGAGAGAGAAAAGTGACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.77

Weight (kDa)

9.9

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 4 cut(s) 88, 233, 269, 341
AclWI GGATC 2 cut(s) 167, 385
AcoI YGGCCR 1 cut(s) 351
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 2 cut(s) 161, 319
AluBI AGCT 9 cut(s) 140, 152, 262, 282, 298, 366, 391, 406, 429
AluI AGCT 9 cut(s) 140, 152, 262, 282, 298, 366, 391, 406, 429
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 167, 385
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 4 cut(s) 14, 298, 301, 391
AsiSI GCGATCGC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 285, 288, 378
BccI CCATC 1 cut(s) 282
BceAI ACGGC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 327
BisI GCNGC 4 cut(s) 15, 299, 302, 392
BlsI GCNGC 4 cut(s) 16, 300, 303, 393
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 338, 439
Bpu14I TTCGAA 1 cut(s) 127
BpuEI CTTGAG 3 cut(s) 118, 304, 464
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 3 cut(s) 285, 288, 378
Bsh1285I CGRYCG 4 cut(s) 112, 237, 269, 354
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 336
BsiEI CGRYCG 4 cut(s) 112, 237, 269, 354
BsiSI CCGG 2 cut(s) 144, 354
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 3 cut(s) 109, 172, 377
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 4 cut(s) 88, 233, 269, 341
BspANI GGCC 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 338, 439
BspPI GGATC 2 cut(s) 167, 385
BspT104I TTCGAA 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 109, 172, 377
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 217, 347, 476
Bst6I CTCTTC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 5 cut(s) 231, 260, 341, 389, 431
BstDSI CCRYGG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 112, 175, 380
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 109, 172, 377
BstMCI CGRYCG 4 cut(s) 112, 237, 269, 354
BstMWI GCNNNNNNNGC 2 cut(s) 23, 268
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 285, 288, 378
BstZI CGGCCG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 231, 260, 341, 389, 431
CfoI GCGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 8, 35, 273
CviQI GTAC 1 cut(s) 277
DpnI GATC 3 cut(s) 111, 174, 379
DpnII GATC 3 cut(s) 109, 172, 377
EaeI YGGCCR 1 cut(s) 351
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 3 cut(s) 11, 38, 276
FaiI YATR 6 cut(s) 9, 36, 171, 192, 194, 274
FatI CATG 3 cut(s) 7, 34, 272
FauI CCCGC 1 cut(s) 348
FauNDI CATATG 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 15, 299, 302, 392
Fsp4HI GCNGC 4 cut(s) 15, 299, 302, 392
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 325
GluI GCNGC 4 cut(s) 15, 299, 302, 392
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 144, 354
HhaI GCGC 1 cut(s) 326
Hin1II CATG 3 cut(s) 11, 38, 276
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 1 cut(s) 250
HpaII CCGG 2 cut(s) 144, 354
Hpy188I TCNGA 3 cut(s) 370, 377, 410
Hpy188III TCNNGA 1 cut(s) 459
HpyAV CCTTC 2 cut(s) 123, 313
HpyCH4III ACNGT 3 cut(s) 217, 347, 476
HpyCH4V TGCA 2 cut(s) 32, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 268
Hsp92II CATG 3 cut(s) 11, 38, 276
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 109, 172, 377
LmnI GCTCC 2 cut(s) 371, 411
LpnPI CCDG 3 cut(s) 157, 312, 367
Lsp1109I GCAGC 3 cut(s) 285, 288, 378
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 92, 470
MalI GATC 3 cut(s) 111, 174, 379
MbiI CCGCTC 1 cut(s) 88
MboI GATC 3 cut(s) 109, 172, 377
MboII GAAGA 2 cut(s) 79, 304
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 1 cut(s) 200
MnlI CCTC 5 cut(s) 42, 93, 98, 186, 195
MseI TTAA 2 cut(s) 203, 425
MspI CCGG 2 cut(s) 144, 354
MwoI GCNNNNNNNGC 2 cut(s) 23, 268
NcoI CCATGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 192
NdeII GATC 3 cut(s) 109, 172, 377
NlaIII CATG 3 cut(s) 11, 38, 276
NlaIV GGNNCC 2 cut(s) 338, 439
NmuCI GTSAC 1 cut(s) 470
NspV TTCGAA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 356
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 16, 300, 303, 393
Ple19I CGATCG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 338, 439
PspPI GGNCC 1 cut(s) 4
PvuI CGATCG 1 cut(s) 112
RgaI GCGATCGC 1 cut(s) 112
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 203, 425
SatI GCNGC 4 cut(s) 15, 299, 302, 392
Sau3AI GATC 3 cut(s) 109, 172, 377
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 341
SfaAI GCGATCGC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 127
SgfI GCGATCGC 1 cut(s) 112
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 3 cut(s) 97, 283, 443
SmoI CTYRAG 3 cut(s) 97, 283, 443
Sse9I AATT 1 cut(s) 200
SsiI CCGC 4 cut(s) 88, 233, 269, 341
SspMI CTAG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 3 cut(s) 217, 347, 476
TaqI TCGA 4 cut(s) 127, 253, 265, 458
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 203, 425
Tru9I TTAA 2 cut(s) 203, 425
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 4 cut(s) 14, 298, 301, 391
Tsp45I GTSAC 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.