Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007563

Physical Location & Seq

Genomic Coordinates Forward (+)

6325681 .. 6335109

Gene Structure 9429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCCAGAAAGCTTGAGGAAGCTCAATTACCTCGTGCGGGGATGATCAAACGCCAATTCTCTTCGTGGAGCTCCGCCCTTATCCTGATGGTTCTTAATGGCGGCTTTCTTAGAGAGGAAATTTACGGGGCTCAAAAGATCGATACGGGTCTCGATGCGGGATTTTCATCAAGAAGATCGATATGGGTCTCGATCTTCGAGTGCTTCGTAAAAATACCGACAACGGGTGGAGATGGCGGAGACGACGGAAGTGAGCCGAATAAGATACCGAGAATAGGCGGTAGTGGTGGTGGCGCCGCTGCCGGTGGCGCCATTTTTGTGCGCTTCGTCGTGGTTTGGCCTTGGAGGCATCCTCATCTCAATCTCTACTTCTCTCCTCTCCTTTCCCCCAACAAAGCAAGACCTAAGCTCAACACGGCCTTGCATCAACTTCGGCCTCCACACGCTCCCTTCAATCGAAGAGCTACTGTTCCTCGAAGACCATCGACCTGCGATCATCAACGGAGCGATGGTTATGATCTCCAAGCCTGCAGCTCTCCAAGTCAAGTTTCCGGCTTGTTAGATCGAAGCTACCGCTGGAGCTCGGTTAATGGCGGCGGTAGAAGGCCGGAGGCACTGTCGAAGCTTGTTGCAACTGTCCAAAACCGGATGCAGCTACCGAACCTTGATGGCGCAACTCGATTTTGTGGTGAACAGGAGTCGACAAACGATGGTGAAAATGCGGAAAGTTCCCGCATTTCGTCCCGCAAACAAGTCGCCTCCCTATCGTCTCCTTTTAAAGCGGTGGATGGGACCCTGTTAGTGTACGCGCACTTGTATCAATCATCATTGCAGCTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

30.57

Weight (kDa)

9.82

Isoelectric Point (pI)

66.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0026455.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027410 Rroxscaffold_1G00051460 Rroxscaffold_1G00062000 Rroxscaffold_2G00120690 Rroxscaffold_3G00226520 Rroxscaffold_3G00230550 Rroxscaffold_3G00232600 Rroxscaffold_3G00234920 Rroxscaffold_3G00238650 Rroxscaffold_3G00270030 Rroxscaffold_4G00286650 Rroxscaffold_4G00319170 Rroxscaffold_4G00323840 Rroxscaffold_5G00332770 Rroxscaffold_5G00338140 Rroxscaffold_6G00390570 Rroxscaffold_6G00391340 Rroxscaffold_6G00391910 Rroxscaffold_6G00391920 Rroxscaffold_6G00391930 Rroxscaffold_7G00159020 Rroxscaffold_7G00199420 Rroxscaffold_7G00204140
rosa_samantha	Rh5BG194200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	497
AccB1I	GGYRCC	2 cut(s)	293, 308
AccI	GTMKAC	1 cut(s)	701
AccII	CGCG	1 cut(s)	809
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	294, 309
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	3 cut(s)	38, 224, 275
AgsI	TTSAA	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
Alw21I	GWGCWC	2 cut(s)	74, 584
Alw26I	GTCTC	4 cut(s)	155, 193, 234, 774
AoxI	GGCC	4 cut(s)	338, 417, 434, 605
ApeKI	GCWGC	4 cut(s)	299, 531, 652, 832
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	5 cut(s)	296, 311, 324, 674, 811
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	2 cut(s)	701, 725
AvaII	GGWCC	1 cut(s)	792
BanI	GGYRCC	2 cut(s)	293, 308
BanII	GRGCYC	3 cut(s)	74, 133, 584
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	2 cut(s)	74, 584
BbvI	GCAGC	3 cut(s)	286, 543, 664
BccI	CCATC	7 cut(s)	82, 227, 490, 503, 662, 704, 782
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 736, 770
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	155, 193, 234, 774
BfaI	CTAG	1 cut(s)	841
BfmI	CTRYAG	1 cut(s)	529
BfoI	RGCGCY	2 cut(s)	297, 312
BfuAI	ACCTGC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	7 cut(s)	103, 297, 300, 532, 595, 653, 833
BlsI	GCNGC	7 cut(s)	104, 298, 301, 533, 596, 654, 834
Bme18I	GGWCC	1 cut(s)	792
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	4 cut(s)	295, 310, 793, 794
BmsI	GCATC	4 cut(s)	145, 358, 433, 639
BpiI	GAAGAC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	598
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	2 cut(s)	141, 179
BsaBI	GATNNNNATC	1 cut(s)	166
BsaHI	GRCGYC	2 cut(s)	294, 309
BsaI	GGTCTC	2 cut(s)	155, 193
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	4 cut(s)	496, 526, 602, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 224, 275
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	166
BseCI	ATCGAT	2 cut(s)	141, 179
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	4 cut(s)	48, 349, 654, 793
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	38, 224, 275
BseMI	GCAATG	1 cut(s)	827
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	286, 543, 664
BseYI	CCCAGC	1 cut(s)	835
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	4 cut(s)	340, 419, 436, 607
BshNI	GGYRCC	2 cut(s)	293, 308
BshVI	ATCGAT	2 cut(s)	141, 179
BsiHKAI	GWGCWC	2 cut(s)	74, 584
BsiSI	CCGG	4 cut(s)	303, 552, 608, 646
BslFI	GGGAC	2 cut(s)	727, 805
BslI	CCNNNNNNNGG	3 cut(s)	38, 224, 275
BsmAI	GTCTC	4 cut(s)	155, 193, 234, 774
BsmBI	CGTCTC	2 cut(s)	234, 774
BsmFI	GGGAC	2 cut(s)	727, 805
BsnI	GGCC	4 cut(s)	340, 419, 436, 607
Bso31I	GGTCTC	2 cut(s)	155, 193
Bsp1286I	GDGCHC	3 cut(s)	74, 133, 584
Bsp143I	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
BspANI	GGCC	4 cut(s)	340, 419, 436, 607
BspDI	ATCGAT	2 cut(s)	141, 179
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	4 cut(s)	295, 310, 793, 794
BspMAI	CTGCAG	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	454
BspT107I	GGYRCC	2 cut(s)	293, 308
BspTNI	GGTCTC	2 cut(s)	155, 193
BsrDI	GCAATG	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
BssNI	GRCGYC	2 cut(s)	294, 309
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	469, 618, 637
Bst6I	CTCTTC	2 cut(s)	67, 454
BstACI	GRCGYC	2 cut(s)	294, 309
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	2 cut(s)	110, 405
BstF5I	GGATG	4 cut(s)	48, 349, 654, 793
BstFNI	CGCG	1 cut(s)	809
BstH2I	RGCGCY	2 cut(s)	297, 312
BstHHI	GCGC	5 cut(s)	296, 311, 324, 674, 811
BstKTI	GATC	7 cut(s)	48, 141, 179, 195, 496, 520, 565
BstMAI	GTCTC	4 cut(s)	155, 193, 234, 774
BstMBI	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 346
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	3 cut(s)	286, 543, 664
BstV2I	GAAGAC	1 cut(s)	484
Bsu15I	ATCGAT	2 cut(s)	141, 179
BsuRI	GGCC	4 cut(s)	340, 419, 436, 607
BsuTUI	ATCGAT	2 cut(s)	141, 179
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	4 cut(s)	48, 349, 654, 793
BtsIMutI	CAGTG	1 cut(s)	614
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	5 cut(s)	296, 311, 324, 674, 811
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	792
ClaI	ATCGAT	2 cut(s)	141, 179
Csp6I	GTAC	1 cut(s)	805
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	2 cut(s)	110, 405
DinI	GGCGCC	2 cut(s)	295, 310
DpnI	GATC	7 cut(s)	47, 140, 178, 194, 495, 519, 564
DpnII	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
DraI	TTTAAA	1 cut(s)	778
Eam1104I	CTCTTC	2 cut(s)	67, 454
EarI	CTCTTC	2 cut(s)	67, 454
EciI	GGCGGA	2 cut(s)	64, 252
Ecl136II	GAGCTC	2 cut(s)	72, 582
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	3 cut(s)	74, 133, 584
Eco31I	GGTCTC	2 cut(s)	155, 193
Eco47I	GGWCC	1 cut(s)	792
Eco53kI	GAGCTC	2 cut(s)	72, 582
EcoICRI	GAGCTC	2 cut(s)	72, 582
EcoO109I	RGGNCCY	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	3 cut(s)	74, 133, 584
EgeI	GGCGCC	2 cut(s)	295, 310
EheI	GGCGCC	2 cut(s)	295, 310
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	2 cut(s)	234, 774
FaiI	YATR	2 cut(s)	184, 516
FaqI	GGGAC	2 cut(s)	727, 805
FauI	CCCGC	4 cut(s)	31, 151, 740, 752
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	7 cut(s)	103, 297, 300, 532, 595, 653, 833
FokI	GGATG	4 cut(s)	55, 336, 661, 800
FriOI	GRGCYC	3 cut(s)	74, 133, 584
Fsp4HI	GCNGC	7 cut(s)	103, 297, 300, 532, 595, 653, 833
FspBI	CTAG	1 cut(s)	841
GlaI	GCGC	5 cut(s)	295, 310, 323, 673, 810
GluI	GCNGC	7 cut(s)	103, 297, 300, 532, 595, 653, 833
GsaI	CCCAGC	1 cut(s)	839
GsuI	CTGGAG	1 cut(s)	598
HaeII	RGCGCY	2 cut(s)	297, 312
HaeIII	GGCC	4 cut(s)	340, 419, 436, 607
HapII	CCGG	4 cut(s)	303, 552, 608, 646
HhaI	GCGC	5 cut(s)	296, 311, 324, 674, 811
Hin1I	GRCGYC	2 cut(s)	294, 309
Hin6I	GCGC	5 cut(s)	294, 309, 322, 672, 809
HinP1I	GCGC	5 cut(s)	294, 309, 322, 672, 809
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	2 cut(s)	11, 623
HinfI	GANTC	1 cut(s)	698
HpaII	CCGG	4 cut(s)	303, 552, 608, 646
HphI	GGTGA	2 cut(s)	701, 725
Hpy166II	GTNNAC	3 cut(s)	692, 702, 805
Hpy188III	TCNNGA	5 cut(s)	6, 85, 152, 171, 190
Hpy8I	GTNNAC	3 cut(s)	692, 702, 805
Hpy99I	CGWCG	2 cut(s)	248, 332
HpyAV	CCTTC	2 cut(s)	460, 597
HpyCH4III	ACNGT	3 cut(s)	469, 618, 637
HpyCH4V	TGCA	5 cut(s)	424, 531, 632, 652, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 346
HpyF3I	CTNAG	2 cut(s)	110, 405
Hsp92I	GRCGYC	2 cut(s)	294, 309
HspAI	GCGC	5 cut(s)	294, 309, 322, 672, 809
KasI	GGCGCC	2 cut(s)	293, 308
KflI	GGGWCCC	1 cut(s)	792
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
LguI	GCTCTTC	1 cut(s)	454
LmnI	GCTCC	5 cut(s)	69, 77, 451, 504, 579
Lsp1109I	GCAGC	3 cut(s)	286, 543, 664
LweI	GCATC	4 cut(s)	145, 358, 433, 639
MaeI	CTAG	1 cut(s)	841
MalI	GATC	7 cut(s)	47, 140, 178, 194, 495, 519, 564
MboI	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
MboII	GAAGA	5 cut(s)	54, 186, 187, 471, 489
MhlI	GDGCHC	3 cut(s)	74, 133, 584
MluCI	AATT	3 cut(s)	26, 56, 120
Mly113I	GGCGCC	2 cut(s)	294, 309
MlyI	GAGTC	1 cut(s)	707
MseI	TTAA	3 cut(s)	96, 588, 777
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	3 cut(s)	299, 576, 835
MspI	CCGG	4 cut(s)	303, 552, 608, 646
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	2 cut(s)	308, 346
NarI	GGCGCC	2 cut(s)	294, 309
NdeII	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
NlaIV	GGNNCC	4 cut(s)	295, 310, 793, 794
PciSI	GCTCTTC	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	104, 298, 301, 533, 596, 654, 834
PleI	GAGTC	1 cut(s)	706
PluTI	GGCGCC	2 cut(s)	297, 312
PpsI	GAGTC	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	792
Psp124BI	GAGCTC	2 cut(s)	74, 584
Psp5II	RGGWCCY	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	835
PspN4I	GGNNCC	4 cut(s)	295, 310, 793, 794
PspPI	GGNCC	1 cut(s)	792
PspPPI	RGGWCCY	1 cut(s)	792
PstI	CTGCAG	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	835
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	2 cut(s)	74, 584
SalI	GTCGAC	1 cut(s)	700
SapI	GCTCTTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	96, 588, 777
SatI	GCNGC	7 cut(s)	103, 297, 300, 532, 595, 653, 833
Sau3AI	GATC	7 cut(s)	45, 138, 176, 192, 493, 517, 562
Sau96I	GGNCC	1 cut(s)	792
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	3 cut(s)	74, 133, 584
SfaNI	GCATC	4 cut(s)	145, 358, 433, 639
SfcI	CTRYAG	1 cut(s)	529
SfoI	GGCGCC	2 cut(s)	295, 310
SinI	GGWCC	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	26, 56, 120
SspDI	GGCGCC	2 cut(s)	293, 308
SspMI	CTAG	1 cut(s)	841
SstI	GAGCTC	2 cut(s)	74, 584
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	469, 618, 637
TasI	AATT	3 cut(s)	26, 56, 120
TauI	GCSGC	3 cut(s)	105, 299, 597
Tru1I	TTAA	3 cut(s)	96, 588, 777
Tru9I	TTAA	3 cut(s)	96, 588, 777
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	4 cut(s)	299, 531, 652, 832
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	2 cut(s)	261, 517
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	792
XapI	RAATTY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.