Rh7CG236700
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011517
Physical Location & Seq
Reverse (-)
22154808 .. 22179192
24385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG236700.1

Sequence Viewer

Length: 819 bp
ATGCGTGATTCAAGGCTCCAAGAGGTAGGATCCTCTACTGCCTCGGAAGAAACTGGTATTACTGCAGCATTGCCGCCTAGTATGATGTCATCAGATGAAGACCCTAGTCTGGAGAACGTGCTCTACAGCGCTGCGAGAAGCAATCGAATGAATCGATTCAGGATTTACTTATTTGCTTGCACATGGGGATGTGAGAGTCATCCAGCAGCAAAGGGAATGTGGATGAAGCCTTTTCCTCATTTTGATAACTTGGGAAATGTCTTTGGAAAAGATCGTGTTAATGGAAAGCAAGCAGCAAGTGCTACTGATTACTTGGATGAAATCGATCAAAACAATGATGGCCTAGATGACATTGCTGAAGTAATGACTACCCCTCCACCTGTAGTAGTAGAAGGTTCCAATCAAGCTCCAAGGAATAGGAAGAGGAAGAGGACAAATGCATATGTACTAGGGTTGACCCAAATGGTTGGTGCAATGTCCAAGACTGCTGAAGCAATGGATAGGCTTGTGGGAAGTCTTGTAGAGCTTGATCCCATGCATCACGTCTATGATGAGGTATCCAAAGTTGAAGGTTTAAGTACCTCTTCTAAATTGAAAGTAAGTCGGATTATCATGGCTGATCCAATGAAAGGACAGATTGAGTATGCAGAAAGAGGAAGAAAAATATGGAGGTGGAGTTTGCACAATCGCCGATTGCTATATATGGTCGACTTCGTTGTCGGAGTGAATCCAATCTTTCGTGCTCCTCAGCAACCGGCATCCGAGACCAGAGATCGGAGACGCAAATCTCCGACGACGCAAGGGCTTGCGATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

272

Amino Acids

30.44

Weight (kDa)

8.81

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AccI GTMKAC 1 cut(s) 708
AciI CCGC 1 cut(s) 74
AclWI GGATC 4 cut(s) 24, 37, 524, 614
AcuI CTGAAG 2 cut(s) 378, 510
AfaI GTAC 2 cut(s) 447, 580
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 3 cut(s) 109, 629, 774
AgsI TTSAA 3 cut(s) 12, 569, 595
AjiI CACGTC 1 cut(s) 544
AluBI AGCT 3 cut(s) 407, 526, 816
AluI AGCT 3 cut(s) 407, 526, 816
Alw21I GWGCWC 2 cut(s) 123, 745
Alw26I GTCTC 2 cut(s) 758, 772
AlwI GGATC 4 cut(s) 24, 37, 524, 614
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 4 cut(s) 65, 131, 206, 293
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 123, 745
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 77, 118, 218, 305
BccI CCATC 1 cut(s) 332
BciVI GTATCC 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 758, 772
BfaI CTAG 4 cut(s) 78, 105, 344, 449
BfmI CTRYAG 3 cut(s) 63, 124, 381
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 5 cut(s) 66, 74, 132, 207, 294
BlsI GCNGC 5 cut(s) 67, 75, 133, 208, 295
BmgBI CACGTC 1 cut(s) 544
BmiI GGNNCC 3 cut(s) 17, 31, 397
BmsI GCATC 2 cut(s) 547, 767
BoxI GACNNNNGTC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 747
Bsa29I ATCGAT 2 cut(s) 154, 324
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 42, 410
BsaXI ACNNNNNCTCC 4 cut(s) 358, 388, 661, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 629, 774
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 4 cut(s) 68, 351, 480, 501
BseCI ATCGAT 2 cut(s) 154, 324
BseDI CCNNGG 2 cut(s) 42, 410
BseGI GGATG 5 cut(s) 194, 199, 228, 322, 758
BseLI CCNNNNNNNGG 3 cut(s) 109, 629, 774
BseMI GCAATG 4 cut(s) 68, 351, 480, 501
BseMII CTCAG 1 cut(s) 761
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 735
BseXI GCAGC 4 cut(s) 77, 118, 218, 305
BshFI GGCC 1 cut(s) 342
BshVI ATCGAT 2 cut(s) 154, 324
BsiHKAI GWGCWC 2 cut(s) 123, 745
BsiSI CCGG 1 cut(s) 755
BslI CCNNNNNNNGG 3 cut(s) 109, 629, 774
BsmAI GTCTC 2 cut(s) 758, 772
BsmBI CGTCTC 1 cut(s) 772
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 758
Bsp1286I GDGCHC 2 cut(s) 123, 745
Bsp143I GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 760
BspDI ATCGAT 2 cut(s) 154, 324
BspLI GGNNCC 3 cut(s) 17, 31, 397
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 4 cut(s) 24, 37, 524, 614
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 4 cut(s) 68, 351, 480, 501
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 2 cut(s) 42, 410
BssMI GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
BssT1I CCWWGG 1 cut(s) 410
Bst6I CTCTTC 3 cut(s) 416, 422, 589
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 178, 291, 807
BstDEI CTNAG 1 cut(s) 747
BstF5I GGATG 5 cut(s) 194, 199, 228, 322, 758
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 7 cut(s) 32, 274, 328, 532, 622, 775, 813
BstMAI GTCTC 2 cut(s) 758, 772
BstMBI GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstPAI GACNNNNGTC 1 cut(s) 105
BstSFI CTRYAG 3 cut(s) 63, 124, 381
BstV1I GCAGC 4 cut(s) 77, 118, 218, 305
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 29
Bsu15I ATCGAT 2 cut(s) 154, 324
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 2 cut(s) 154, 324
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 5 cut(s) 194, 199, 228, 322, 758
Cac8I GCNNGC 3 cut(s) 178, 291, 807
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 754
ClaI ATCGAT 2 cut(s) 154, 324
CseI GACGC 2 cut(s) 789, 805
Csp6I GTAC 2 cut(s) 446, 579
CviAII CATG 3 cut(s) 183, 535, 613
CviJI RGCY 9 cut(s) 16, 229, 342, 407, 505, 526, 617, 805, 816
CviKI_1 RGCY 9 cut(s) 16, 229, 342, 407, 505, 526, 617, 805, 816
CviQI GTAC 2 cut(s) 446, 579
DdeI CTNAG 1 cut(s) 747
DpnI GATC 7 cut(s) 31, 273, 327, 531, 621, 774, 812
DpnII GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
Eam1104I CTCTTC 3 cut(s) 416, 422, 589
EarI CTCTTC 3 cut(s) 416, 422, 589
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 758
Eco47III AGCGCT 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 378, 510
EcoT14I CCWWGG 1 cut(s) 410
EcoT22I ATGCAT 2 cut(s) 442, 540
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 3 cut(s) 186, 538, 616
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FatI CATG 3 cut(s) 182, 534, 612
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 5 cut(s) 66, 74, 132, 207, 294
FokI GGATG 5 cut(s) 186, 201, 235, 329, 745
Fsp4HI GCNGC 5 cut(s) 66, 74, 132, 207, 294
FspBI CTAG 4 cut(s) 78, 105, 344, 449
GlaI GCGC 1 cut(s) 130
GluI GCNGC 5 cut(s) 66, 74, 132, 207, 294
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 755
HgaI GACGC 2 cut(s) 789, 805
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 186, 538, 616
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 2 cut(s) 456, 709
HindII GTYRAC 2 cut(s) 456, 709
HinfI GANTC 5 cut(s) 8, 151, 156, 196, 727
HpaII CCGG 1 cut(s) 755
Hpy166II GTNNAC 2 cut(s) 456, 709
Hpy188I TCNGA 7 cut(s) 46, 94, 606, 722, 763, 777, 792
Hpy188III TCNNGA 2 cut(s) 110, 160
Hpy8I GTNNAC 2 cut(s) 456, 709
Hpy99I CGWCG 2 cut(s) 796, 799
HpyAV CCTTC 2 cut(s) 386, 563
HpyCH4IV ACGT 2 cut(s) 117, 543
HpyCH4V TGCA 7 cut(s) 65, 180, 440, 473, 538, 647, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 2 cut(s) 117, 543
Hsp92II CATG 3 cut(s) 186, 538, 616
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
LmnI GCTCC 3 cut(s) 21, 412, 748
LpnPI CCDG 7 cut(s) 39, 95, 145, 216, 393, 768, 781
Lsp1109I GCAGC 4 cut(s) 77, 118, 218, 305
LweI GCATC 2 cut(s) 547, 767
MaeI CTAG 4 cut(s) 78, 105, 344, 449
MaeII ACGT 2 cut(s) 117, 543
MalI GATC 7 cut(s) 31, 273, 327, 531, 621, 774, 812
MboI GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
MboII GAAGA 6 cut(s) 59, 110, 433, 439, 576, 669
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 123, 745
MluCI AATT 1 cut(s) 590
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 3 cut(s) 584, 700, 815
Mph1103I ATGCAT 2 cut(s) 442, 540
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 279, 575
MslI CAYNNNNRTG 2 cut(s) 187, 546
MspA1I CMGCKG 1 cut(s) 816
MspI CCGG 1 cut(s) 755
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeI CATATG 1 cut(s) 442
NdeII GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
NlaIII CATG 3 cut(s) 186, 538, 616
NlaIV GGNNCC 3 cut(s) 17, 31, 397
NsiI ATGCAT 2 cut(s) 442, 540
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 4 cut(s) 8, 151, 156, 727
PkrI GCNGC 5 cut(s) 67, 75, 133, 208, 295
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 17, 31, 397
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 816
RsaI GTAC 2 cut(s) 447, 580
RsaNI GTAC 2 cut(s) 446, 579
RseI CAYNNNNRTG 2 cut(s) 187, 546
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 2 cut(s) 279, 575
SatI GCNGC 5 cut(s) 66, 74, 132, 207, 294
Sau3AI GATC 7 cut(s) 29, 271, 325, 529, 619, 772, 810
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 2 cut(s) 123, 745
SfaNI GCATC 2 cut(s) 547, 767
SfcI CTRYAG 3 cut(s) 63, 124, 381
SmiMI CAYNNNNRTG 2 cut(s) 187, 546
Sse9I AATT 1 cut(s) 590
SsiI CCGC 1 cut(s) 74
SspMI CTAG 4 cut(s) 78, 105, 344, 449
StyI CCWWGG 1 cut(s) 410
TaiI ACGT 2 cut(s) 120, 546
TaqI TCGA 4 cut(s) 145, 154, 324, 708
TasI AATT 1 cut(s) 590
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 4 cut(s) 8, 151, 156, 727
Tru1I TTAA 2 cut(s) 279, 575
Tru9I TTAA 2 cut(s) 279, 575
TseI GCWGC 4 cut(s) 65, 131, 206, 293
TspDTI ATGAA 5 cut(s) 111, 164, 239, 333, 641
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 4 cut(s) 78, 105, 344, 449
Zsp2I ATGCAT 2 cut(s) 442, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.