Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000233.1

Orthogroup ID

OG0011517

Physical Location & Seq

Genomic Coordinates Forward (+)

21713 .. 22192

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000233.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtggatgaagccttttcctcattttgataacttgggaaatgtctttggaaaagatcgtgctaatggaaagcaagcagcaagtgctactgattatgtggatgagatcgatcaaaacaatgatggcctagatgacattgctaaagtaatgactatccctccacctgtagtagtagaaggttccaatcaagctccaaggaataggaaaaggaagaggacagatgcatatgtactagggttgtcccaaatggttggtacaatgtccaagactgctgaagcaatggataggcttgtgggaagtcttgcagagcttgatcccatgcgtcaagtctatgatgaggtatccaaagttgaaggtttaagtaccacttctaaattgaaagtaagtcagattatcatggctgatccaatgaaagtgagtcttcttcttagtcttcctggagatgttaaaaaagaatgggtggaagaattgcttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

5.23

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28531 FvH4_4g08331
rosa_chinensis	RchiOBHm_Chr7g0205671
rosa_laevigata	RLG00000016732 RLG00000019543
rosa_multiflora	Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092690 Rroxscaffold_3G00250230
rosa_samantha	Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	308, 398
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	3 cut(s)	231, 256, 364
AgsI	TTSAA	3 cut(s)	353, 379, 476
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	191, 310
AluI	AGCT	2 cut(s)	191, 310
AlwI	GGATC	2 cut(s)	308, 398
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	413, 425
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	128, 233
BfmI	CTRYAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	413, 425
BpmI	CTGGAG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bse3DI	GCAATG	2 cut(s)	135, 285
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	12, 106
BseMI	GCAATG	2 cut(s)	135, 285
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	55, 105, 109, 313, 403
BspANI	GGCC	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	308, 398
BsrDI	GCAATG	2 cut(s)	135, 285
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	5 cut(s)	55, 105, 109, 313, 403
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	12, 106
BstKTI	GATC	5 cut(s)	58, 108, 112, 316, 406
BstMBI	GATC	5 cut(s)	55, 105, 109, 313, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	2 cut(s)	413, 425
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	12, 106
Cac8I	GCNNGC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	230, 255, 363
CviAII	CATG	2 cut(s)	319, 397
CviJI	RGCY	6 cut(s)	13, 126, 191, 289, 310, 401
CviKI_1	RGCY	6 cut(s)	13, 126, 191, 289, 310, 401
CviQI	GTAC	3 cut(s)	230, 255, 363
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	5 cut(s)	57, 107, 111, 315, 405
DpnII	GATC	5 cut(s)	55, 105, 109, 313, 403
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	194
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	2 cut(s)	322, 400
FaiI	YATR	6 cut(s)	96, 226, 228, 320, 333, 398
FalI	AAGNNNNNCTT	5 cut(s)	352, 384, 405, 437, 456
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	318, 396
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	19, 113
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	128, 233
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	126
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	322, 400
HinfI	GANTC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	170, 347
HpyCH4V	TGCA	2 cut(s)	224, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	322, 400
Kzo9I	GATC	5 cut(s)	55, 105, 109, 313, 403
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	177, 423, 450
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	128, 233
MalI	GATC	5 cut(s)	57, 107, 111, 315, 405
MboI	GATC	5 cut(s)	55, 105, 109, 313, 403
MboII	GAAGA	5 cut(s)	223, 413, 416, 425, 476
MluCI	AATT	2 cut(s)	374, 467
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	30, 168, 207, 331
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	359, 447
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	5 cut(s)	55, 105, 109, 313, 403
NlaIII	CATG	2 cut(s)	322, 400
NlaIV	GGNNCC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	471
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	181
RsaI	GTAC	3 cut(s)	231, 256, 364
RsaNI	GTAC	3 cut(s)	230, 255, 363
SaqAI	TTAA	2 cut(s)	359, 447
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	55, 105, 109, 313, 403
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	6 cut(s)	166, 181, 193, 312, 342, 358
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	374, 467
SspMI	CTAG	2 cut(s)	128, 233
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	194
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	374, 467
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	359, 447
Tru9I	TTAA	2 cut(s)	359, 447
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	23, 425
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	128, 233
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.