FvH4_4g08331
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011517
Physical Location & Seq
Forward (+)
8270760 .. 8271239
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08331.t1

Sequence Viewer

Length: 480 bp
ATGTGGATGAAGCCTTTTCCTCATTTTGACAACTTGGGAAATGTCTTTGGTAAAGATCGTGCAAATGGAAAGCAAGCAGCCAATGCTACTGATTATATTGATGAGATTGATCTAAACAATGATGGCCTAGAAGAAATTGCTGAAATGATGACTACTCCTCCACCTGTAGCAGCAGAAGGTCTAAATGAAGCTCCAAGGAATAGGAAAAGGAAGAGGACAGATGCATATGTACTAGGGCTGACACAAATGGTTGGTGCAATGTCTAAGACTATTGAAGCAATGGATAAGCTTGTGGGAAGTCTTGCAGAATTTGATCCCATGCGTCAAGTCTATGATGAGGTATCAAAAGTTGAAGGTTTAAGTACCTCGTCTAAACTAAAAGTAAGTCAGATTATCATGGCTGATCCTGTGAAAGTCAGTCTCCTTCTCAGTCTTCCTGAAGATGTTAAAAAAGAATGGGTGGAGGAATTGCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

4.81

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 308, 398
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 458, 459
AfaI GTAC 2 cut(s) 231, 364
AgsI TTSAA 2 cut(s) 275, 353
AluBI AGCT 2 cut(s) 191, 289
AluI AGCT 2 cut(s) 191, 289
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 2 cut(s) 308, 398
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 77, 170
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 89, 182
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 128, 233
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 78, 171
BlsI GCNGC 2 cut(s) 79, 172
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bse3DI GCAATG 2 cut(s) 264, 285
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 12
BseMI GCAATG 2 cut(s) 264, 285
BseMII CTCAG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 89, 182
BshFI GGCC 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 55, 109, 313, 403
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 441
BspPI GGATC 2 cut(s) 308, 398
BsrDI GCAATG 2 cut(s) 264, 285
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 4 cut(s) 55, 109, 313, 403
BssT1I CCWWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 264, 428
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 4 cut(s) 58, 112, 316, 406
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 4 cut(s) 55, 109, 313, 403
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 89, 182
BstV2I GAAGAC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 75
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 230, 363
CviAII CATG 2 cut(s) 319, 397
CviJI RGCY 7 cut(s) 13, 80, 126, 191, 238, 289, 401
CviKI_1 RGCY 7 cut(s) 13, 80, 126, 191, 238, 289, 401
CviQI GTAC 2 cut(s) 230, 363
DdeI CTNAG 2 cut(s) 264, 428
DpnI GATC 4 cut(s) 57, 111, 315, 405
DpnII GATC 4 cut(s) 55, 109, 313, 403
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 458, 459
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 322, 400
FaiI YATR 6 cut(s) 96, 226, 228, 320, 333, 398
FatI CATG 2 cut(s) 318, 396
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 78, 171
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 78, 171
FspBI CTAG 2 cut(s) 128, 233
GluI GCNGC 2 cut(s) 78, 171
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 322, 400
HindIII AAGCTT 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 170, 347, 434
HpyCH4V TGCA 4 cut(s) 62, 224, 257, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 264, 428
Hsp92II CATG 2 cut(s) 322, 400
Kzo9I GATC 4 cut(s) 55, 109, 313, 403
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 177, 420, 450
Lsp1109I GCAGC 2 cut(s) 89, 182
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 128, 233
MalI GATC 4 cut(s) 57, 111, 315, 405
MboI GATC 4 cut(s) 55, 109, 313, 403
MboII GAAGA 4 cut(s) 143, 223, 425, 452
MluCI AATT 3 cut(s) 135, 308, 467
MnlI CCTC 6 cut(s) 30, 168, 207, 331, 376, 457
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 359, 447
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeI CATATG 1 cut(s) 226
NdeII GATC 4 cut(s) 55, 109, 313, 403
NlaIII CATG 2 cut(s) 322, 400
NsiI ATGCAT 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 471
PkrI GCNGC 2 cut(s) 79, 172
RsaI GTAC 2 cut(s) 231, 364
RsaNI GTAC 2 cut(s) 230, 363
SaqAI TTAA 2 cut(s) 359, 447
SatI GCNGC 2 cut(s) 78, 171
Sau3AI GATC 4 cut(s) 55, 109, 313, 403
SetI ASST 7 cut(s) 166, 181, 193, 291, 342, 358, 368
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 3 cut(s) 135, 308, 467
SspMI CTAG 2 cut(s) 128, 233
StyI CCWWGG 1 cut(s) 194
TasI AATT 3 cut(s) 135, 308, 467
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 2 cut(s) 359, 447
Tru9I TTAA 2 cut(s) 359, 447
TseI GCWGC 2 cut(s) 77, 170
TspDTI ATGAA 2 cut(s) 23, 201
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 128, 233
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.