DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 422, 512 |
| AcuI | CTGAAG | 2 cut(s) | 270, 408 |
| AfaI | GTAC | 2 cut(s) | 345, 478 |
| AgsI | TTSAA | 3 cut(s) | 467, 493, 586 |
| AluBI | AGCT | 2 cut(s) | 305, 424 |
| AluI | AGCT | 2 cut(s) | 305, 424 |
| AlwI | GGATC | 2 cut(s) | 422, 512 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 2 cut(s) | 98, 185 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 581 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 535 |
| BbvI | GCAGC | 2 cut(s) | 110, 197 |
| BccI | CCATC | 2 cut(s) | 68, 224 |
| BciVI | GTATCC | 1 cut(s) | 466 |
| BclI | TGATCA | 1 cut(s) | 48 |
| BfaI | CTAG | 2 cut(s) | 236, 347 |
| BfmI | CTRYAG | 1 cut(s) | 273 |
| BfuI | GTATCC | 1 cut(s) | 466 |
| BisI | GCNGC | 2 cut(s) | 99, 186 |
| BlsI | GCNGC | 2 cut(s) | 100, 187 |
| BmiI | GGNNCC | 1 cut(s) | 295 |
| BpiI | GAAGAC | 1 cut(s) | 535 |
| Bsa29I | ATCGAT | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 308 |
| Bse3DI | GCAATG | 4 cut(s) | 22, 243, 378, 399 |
| BseCI | ATCGAT | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 308 |
| BseGI | GGATG | 3 cut(s) | 37, 91, 120 |
| BseMI | GCAATG | 4 cut(s) | 22, 243, 378, 399 |
| BseXI | GCAGC | 2 cut(s) | 110, 197 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BshVI | ATCGAT | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 234 |
| Bsp143I | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspDI | ATCGAT | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 295 |
| BspPI | GGATC | 2 cut(s) | 422, 512 |
| BsrDI | GCAATG | 4 cut(s) | 22, 243, 378, 399 |
| BssECI | CCNNGG | 1 cut(s) | 308 |
| BssMI | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| BssT1I | CCWWGG | 1 cut(s) | 308 |
| Bst6I | CTCTTC | 3 cut(s) | 80, 320, 487 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 1 cut(s) | 183 |
| BstDEI | CTNAG | 1 cut(s) | 538 |
| BstF5I | GGATG | 3 cut(s) | 37, 91, 120 |
| BstKTI | GATC | 6 cut(s) | 51, 166, 216, 220, 430, 520 |
| BstMBI | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 191 |
| BstSFI | CTRYAG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 2 cut(s) | 110, 197 |
| BstV2I | GAAGAC | 1 cut(s) | 535 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 365 |
| Bsu15I | ATCGAT | 1 cut(s) | 216 |
| BsuI | GTATCC | 1 cut(s) | 466 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| BsuTUI | ATCGAT | 1 cut(s) | 216 |
| BtsCI | GGATG | 3 cut(s) | 37, 91, 120 |
| Cac8I | GCNNGC | 1 cut(s) | 183 |
| ClaI | ATCGAT | 1 cut(s) | 216 |
| CseI | GACGC | 1 cut(s) | 425 |
| Csp6I | GTAC | 2 cut(s) | 344, 477 |
| CviAII | CATG | 3 cut(s) | 27, 433, 511 |
| CviJI | RGCY | 6 cut(s) | 121, 234, 305, 403, 424, 515 |
| CviKI_1 | RGCY | 6 cut(s) | 121, 234, 305, 403, 424, 515 |
| CviQI | GTAC | 2 cut(s) | 344, 477 |
| DdeI | CTNAG | 1 cut(s) | 538 |
| DpnI | GATC | 6 cut(s) | 50, 165, 215, 219, 429, 519 |
| DpnII | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| Eam1104I | CTCTTC | 3 cut(s) | 80, 320, 487 |
| EarI | CTCTTC | 3 cut(s) | 80, 320, 487 |
| Eco130I | CCWWGG | 1 cut(s) | 308 |
| Eco57I | CTGAAG | 2 cut(s) | 270, 408 |
| EcoT14I | CCWWGG | 1 cut(s) | 308 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| ErhI | CCWWGG | 1 cut(s) | 308 |
| FaeI | CATG | 3 cut(s) | 30, 436, 514 |
| FaiI | YATR | 8 cut(s) | 28, 72, 204, 340, 342, 434, 447, 512 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 466, 498, 566, 598 |
| FatI | CATG | 3 cut(s) | 26, 432, 510 |
| FauNDI | CATATG | 1 cut(s) | 340 |
| FbaI | TGATCA | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 186 |
| FokI | GGATG | 3 cut(s) | 44, 78, 127 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 186 |
| FspBI | CTAG | 2 cut(s) | 236, 347 |
| GluI | GCNGC | 2 cut(s) | 99, 186 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| HgaI | GACGC | 1 cut(s) | 425 |
| Hin1II | CATG | 3 cut(s) | 30, 436, 514 |
| HincII | GTYRAC | 1 cut(s) | 354 |
| HindII | GTYRAC | 1 cut(s) | 354 |
| HinfI | GANTC | 1 cut(s) | 88 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 354 |
| Hpy188I | TCNGA | 1 cut(s) | 504 |
| Hpy8I | GTNNAC | 1 cut(s) | 354 |
| HpyAV | CCTTC | 2 cut(s) | 284, 461 |
| HpyCH4V | TGCA | 2 cut(s) | 338, 371 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 538 |
| Hsp92II | CATG | 3 cut(s) | 30, 436, 514 |
| Ksp22I | TGATCA | 1 cut(s) | 48 |
| Kzo9I | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 3 cut(s) | 25, 108, 285 |
| Lsp1109I | GCAGC | 2 cut(s) | 110, 197 |
| MaeI | CTAG | 2 cut(s) | 236, 347 |
| MaeIII | GTNAC | 1 cut(s) | 7 |
| MalI | GATC | 6 cut(s) | 50, 165, 215, 219, 429, 519 |
| MboI | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| MboII | GAAGA | 7 cut(s) | 52, 97, 331, 337, 474, 535, 586 |
| MluCI | AATT | 3 cut(s) | 488, 577, 590 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MnlI | CCTC | 5 cut(s) | 138, 276, 321, 445, 490 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 1 cut(s) | 581 |
| MseI | TTAA | 3 cut(s) | 171, 473, 557 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 191 |
| NdeI | CATATG | 1 cut(s) | 340 |
| NdeII | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| NlaIII | CATG | 3 cut(s) | 30, 436, 514 |
| NlaIV | GGNNCC | 1 cut(s) | 295 |
| NmuCI | GTSAC | 1 cut(s) | 7 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 581 |
| PkrI | GCNGC | 2 cut(s) | 100, 187 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 295 |
| RsaI | GTAC | 2 cut(s) | 345, 478 |
| RsaNI | GTAC | 2 cut(s) | 344, 477 |
| SaqAI | TTAA | 3 cut(s) | 171, 473, 557 |
| SatI | GCNGC | 2 cut(s) | 99, 186 |
| Sau3AI | GATC | 6 cut(s) | 48, 163, 213, 217, 427, 517 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SetI | ASST | 7 cut(s) | 274, 295, 307, 426, 456, 472, 482 |
| SfcI | CTRYAG | 1 cut(s) | 273 |
| Sse9I | AATT | 3 cut(s) | 488, 577, 590 |
| SspMI | CTAG | 2 cut(s) | 236, 347 |
| StyI | CCWWGG | 1 cut(s) | 308 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 3 cut(s) | 488, 577, 590 |
| TatI | WGTACW | 1 cut(s) | 343 |
| Tru1I | TTAA | 3 cut(s) | 171, 473, 557 |
| Tru9I | TTAA | 3 cut(s) | 171, 473, 557 |
| TseFI | GTSAC | 1 cut(s) | 7 |
| TseI | GCWGC | 2 cut(s) | 98, 185 |
| Tsp45I | GTSAC | 1 cut(s) | 7 |
| TspDTI | ATGAA | 5 cut(s) | 15, 131, 272, 338, 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 581 |
| XspI | CTAG | 2 cut(s) | 236, 347 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |