RLG00000019543
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011517
Physical Location & Seq
Reverse (-)
53348558 .. 53351991
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019543

Sequence Viewer

Length: 399 bp
ATGAAACAGAGTATTCAAGGCTGGGGAAAAGAGAAGACCAGCTTTCGTTTCACAGGTGGAGGGATTGACATGGCTGGAGAAGGAAGAATAAAAGCAAGCAGAGAGGGAGGAACAATGAAGAGTGACAATGGTTTCAAACCAGGAAAATTTGTTCAAATTGAAAAGTTACTAGAGCAGAAGTTGCAGGGTAGTGGGTTCAAAGCTAGTCCACATATTGAGTCTCGGGTAAAGACACTAAAGAAACAATATAATGCTATATCATATATGATTGTCACCAGCTGCGCCTTTCCTCATTTTGATAACTTGGAAAATGTCTTTGGAAAAGATCGTGCTAATGGAAAGCAAGCAGCAACTGCTACTGATTATGTAGATGAGATTGATCAAAACAATGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

9.19

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 146
AgsI TTSAA 5 cut(s) 17, 136, 155, 161, 199
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 3 cut(s) 42, 203, 279
AluI AGCT 3 cut(s) 42, 203, 279
Alw26I GTCTC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 279, 347
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 266, 359
BccI CCATC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 170, 204, 397
BisI GCNGC 2 cut(s) 280, 348
BlsI GCNGC 2 cut(s) 281, 349
Bme1390I CCNGG 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 266, 359
BseYI CCCAGC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 2 cut(s) 325, 379
BssMI GATC 2 cut(s) 325, 379
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 181, 353
BstC8I GCNNGC 2 cut(s) 97, 345
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 328, 382
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 325, 379
BstMWI GCNNNNNNNGC 2 cut(s) 181, 353
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 266, 359
BstV2I GAAGAC 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 97, 345
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 1 cut(s) 284
CviAII CATG 1 cut(s) 70
CviJI RGCY 6 cut(s) 21, 42, 74, 203, 279, 396
CviKI_1 RGCY 6 cut(s) 21, 42, 74, 203, 279, 396
DpnI GATC 2 cut(s) 327, 381
DpnII GATC 2 cut(s) 325, 379
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 73
FaiI YATR 8 cut(s) 71, 213, 249, 257, 262, 264, 266, 366
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 1 cut(s) 69
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 280, 348
Fsp4HI GCNGC 2 cut(s) 280, 348
FspBI CTAG 3 cut(s) 170, 204, 397
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 280, 348
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 96
HhaI GCGC 1 cut(s) 284
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 353
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 325, 379
LpnPI CCDG 8 cut(s) 7, 39, 52, 60, 126, 153, 170, 289
Lsp1109I GCAGC 2 cut(s) 266, 359
MaeI CTAG 3 cut(s) 170, 204, 397
MaeIII GTNAC 3 cut(s) 122, 165, 271
MalI GATC 2 cut(s) 327, 381
MboI GATC 2 cut(s) 325, 379
MboII GAAGA 3 cut(s) 46, 96, 130
MluCI AATT 2 cut(s) 146, 156
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 4 cut(s) 53, 97, 101, 300
MspA1I CMGCKG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 181, 353
NdeII GATC 2 cut(s) 325, 379
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 2 cut(s) 122, 271
PkrI GCNGC 2 cut(s) 281, 349
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 279
SatI GCNGC 2 cut(s) 280, 348
Sau3AI GATC 2 cut(s) 325, 379
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 141
SetI ASST 4 cut(s) 44, 58, 205, 281
Sse9I AATT 2 cut(s) 146, 156
SspMI CTAG 3 cut(s) 170, 204, 397
StyD4I CCNGG 1 cut(s) 139
TasI AATT 2 cut(s) 146, 156
TseFI GTSAC 2 cut(s) 122, 271
TseI GCWGC 2 cut(s) 279, 347
Tsp45I GTSAC 2 cut(s) 122, 271
TspDTI ATGAA 2 cut(s) 17, 131
XapI RAATTY 1 cut(s) 146
XspI CTAG 3 cut(s) 170, 204, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.