DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 308, 398 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AfaI | GTAC | 2 cut(s) | 231, 364 |
| AgsI | TTSAA | 3 cut(s) | 353, 379, 476 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AluBI | AGCT | 2 cut(s) | 191, 310 |
| AluI | AGCT | 2 cut(s) | 191, 310 |
| AlwI | GGATC | 2 cut(s) | 308, 398 |
| ApeKI | GCWGC | 1 cut(s) | 77 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 471 |
| BbsI | GAAGAC | 2 cut(s) | 413, 425 |
| BbvI | GCAGC | 1 cut(s) | 89 |
| BccI | CCATC | 1 cut(s) | 116 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BciVI | GTATCC | 1 cut(s) | 352 |
| BfaI | CTAG | 1 cut(s) | 233 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BfuI | GTATCC | 1 cut(s) | 352 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| BmiI | GGNNCC | 1 cut(s) | 181 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BpiI | GAAGAC | 2 cut(s) | 413, 425 |
| BpmI | CTGGAG | 1 cut(s) | 459 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 142, 172 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 264 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 2 cut(s) | 12, 106 |
| BseMI | GCAATG | 2 cut(s) | 135, 264 |
| BseXI | GCAGC | 1 cut(s) | 89 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| Bsp143I | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspLI | GGNNCC | 1 cut(s) | 181 |
| BspPI | GGATC | 2 cut(s) | 308, 398 |
| BsrDI | GCAATG | 2 cut(s) | 135, 264 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssMI | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst6I | CTCTTC | 2 cut(s) | 206, 373 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 2 cut(s) | 127, 428 |
| BstF5I | GGATG | 2 cut(s) | 12, 106 |
| BstKTI | GATC | 5 cut(s) | 58, 108, 112, 316, 406 |
| BstMBI | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 1 cut(s) | 89 |
| BstV2I | GAAGAC | 2 cut(s) | 413, 425 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| BsuI | GTATCC | 1 cut(s) | 352 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtsCI | GGATG | 2 cut(s) | 12, 106 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| Csp6I | GTAC | 2 cut(s) | 230, 363 |
| CviAII | CATG | 2 cut(s) | 319, 397 |
| CviJI | RGCY | 5 cut(s) | 13, 126, 191, 289, 310 |
| CviKI_1 | RGCY | 5 cut(s) | 13, 126, 191, 289, 310 |
| CviQI | GTAC | 2 cut(s) | 230, 363 |
| DdeI | CTNAG | 2 cut(s) | 127, 428 |
| DpnI | GATC | 5 cut(s) | 57, 107, 111, 315, 405 |
| DpnII | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| Eam1104I | CTCTTC | 2 cut(s) | 206, 373 |
| EarI | CTCTTC | 2 cut(s) | 206, 373 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 2 cut(s) | 322, 400 |
| FaiI | YATR | 9 cut(s) | 96, 149, 220, 222, 226, 228, 320, 333, 398 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 352, 384, 405, 437, 456 |
| FatI | CATG | 2 cut(s) | 318, 396 |
| FauNDI | CATATG | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 2 cut(s) | 19, 113 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 233 |
| GluI | GCNGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 1 cut(s) | 459 |
| Hin1II | CATG | 2 cut(s) | 322, 400 |
| HincII | GTYRAC | 1 cut(s) | 240 |
| HindII | GTYRAC | 1 cut(s) | 240 |
| HinfI | GANTC | 1 cut(s) | 418 |
| Hpy166II | GTNNAC | 1 cut(s) | 240 |
| Hpy188I | TCNGA | 1 cut(s) | 390 |
| Hpy8I | GTNNAC | 1 cut(s) | 240 |
| HpyAV | CCTTC | 2 cut(s) | 170, 347 |
| HpyCH4V | TGCA | 2 cut(s) | 257, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| HpyF3I | CTNAG | 2 cut(s) | 127, 428 |
| Hsp92II | CATG | 2 cut(s) | 322, 400 |
| Kzo9I | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| LmnI | GCTCC | 1 cut(s) | 196 |
| LpnPI | CCDG | 3 cut(s) | 177, 423, 450 |
| Lsp1109I | GCAGC | 1 cut(s) | 89 |
| MaeI | CTAG | 1 cut(s) | 233 |
| MalI | GATC | 5 cut(s) | 57, 107, 111, 315, 405 |
| MboI | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| MboII | GAAGA | 6 cut(s) | 223, 360, 413, 416, 425, 476 |
| MfeI | CAATTG | 1 cut(s) | 279 |
| MluCI | AATT | 3 cut(s) | 279, 374, 467 |
| MlyI | GAGTC | 1 cut(s) | 427 |
| MnlI | CCTC | 5 cut(s) | 30, 168, 207, 331, 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 471 |
| MseI | TTAA | 2 cut(s) | 359, 447 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MunI | CAATTG | 1 cut(s) | 279 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NdeI | CATATG | 1 cut(s) | 226 |
| NdeII | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| NlaIII | CATG | 2 cut(s) | 322, 400 |
| NlaIV | GGNNCC | 1 cut(s) | 181 |
| PdmI | GAANNNNTTC | 1 cut(s) | 471 |
| PfoI | TCCNGGA | 1 cut(s) | 436 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PleI | GAGTC | 1 cut(s) | 426 |
| PpsI | GAGTC | 1 cut(s) | 426 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 1 cut(s) | 181 |
| RsaI | GTAC | 2 cut(s) | 231, 364 |
| RsaNI | GTAC | 2 cut(s) | 230, 363 |
| SaqAI | TTAA | 2 cut(s) | 359, 447 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau3AI | GATC | 5 cut(s) | 55, 105, 109, 313, 403 |
| SchI | GAGTC | 1 cut(s) | 427 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SetI | ASST | 7 cut(s) | 166, 181, 193, 312, 342, 358, 368 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| Sse9I | AATT | 3 cut(s) | 279, 374, 467 |
| SspMI | CTAG | 1 cut(s) | 233 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 3 cut(s) | 279, 374, 467 |
| TatI | WGTACW | 1 cut(s) | 229 |
| Tru1I | TTAA | 2 cut(s) | 359, 447 |
| Tru9I | TTAA | 2 cut(s) | 359, 447 |
| TseI | GCWGC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 2 cut(s) | 23, 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 94 |
| XmnI | GAANNNNTTC | 1 cut(s) | 471 |
| XspI | CTAG | 1 cut(s) | 233 |