Rh7AG241400
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011517
Physical Location & Seq
Reverse (-)
23602003 .. 23603174
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG241400.1

Sequence Viewer

Length: 345 bp
ATGCTTGCCCGCCCCAGAAAAGATCGTGTTAATGGAAAGCAAGCAGCAAGTGCCATTGATTATGTCAATGAGATTGATCAAAACAATGATGGCCTAGACGACATTGCTGAAGTGATGACTATCCCTCCACCTATAGTAGCAGACGGTTCCAATCAAGCTCCAAGGAATAGGAGAAGGAAGAGGATAGATGCATATGTACTAGGGTTGACACAAATGGTTGGTGCAATGTCGAAGACTACTGAAGCAATGGATAAGCTTGTGAGAAGTCTTGCAGAACTTGATCCCATGCGTCAAGCAGTCTATGATGAGGTATCCAAAGTTGAAGGTTTTAAGTACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

114

Amino Acids

12.77

Weight (kDa)

6.27

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 10
AclWI GGATC 1 cut(s) 275
AcuI CTGAAG 2 cut(s) 129, 261
AfaI GTAC 2 cut(s) 198, 335
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 2 cut(s) 158, 256
AluI AGCT 2 cut(s) 158, 256
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 83
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 76
BfaI CTAG 2 cut(s) 95, 200
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bse3DI GCAATG 3 cut(s) 102, 231, 252
Bse8I GATNNNNATC 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 119
BseMI GCAATG 3 cut(s) 102, 231, 252
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 93
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 22, 76, 280
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 102, 231, 252
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 22, 76, 280
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 6, 10, 42
BstKTI GATC 3 cut(s) 25, 79, 283
BstMBI GATC 3 cut(s) 22, 76, 280
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 6, 10, 42
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 197, 334
CviAII CATG 1 cut(s) 286
CviJI RGCY 3 cut(s) 93, 158, 256
CviKI_1 RGCY 3 cut(s) 93, 158, 256
CviQI GTAC 2 cut(s) 197, 334
DpnI GATC 3 cut(s) 24, 78, 282
DpnII GATC 3 cut(s) 22, 76, 280
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 129, 261
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 289
FaiI YATR 6 cut(s) 63, 134, 193, 195, 287, 303
FalI AAGNNNNNCTT 1 cut(s) 323
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 95, 200
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 93
HgaI GACGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 168, 317
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 191, 224, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 22, 76, 280
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 95, 200
MalI GATC 3 cut(s) 24, 78, 282
MboI GATC 3 cut(s) 22, 76, 280
MboII GAAGA 3 cut(s) 190, 244, 331
MnlI CCTC 3 cut(s) 135, 174, 301
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 2 cut(s) 30, 330
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 22, 76, 280
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 193
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 148
RsaI GTAC 2 cut(s) 198, 335
RsaNI GTAC 2 cut(s) 197, 334
SaqAI TTAA 2 cut(s) 30, 330
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 22, 76, 280
SetI ASST 6 cut(s) 133, 160, 258, 312, 328, 339
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 132
SsiI CCGC 1 cut(s) 10
SspMI CTAG 2 cut(s) 95, 200
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 230
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 2 cut(s) 30, 330
Tru9I TTAA 2 cut(s) 30, 330
TseI GCWGC 1 cut(s) 44
XspI CTAG 2 cut(s) 95, 200
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.