RLG00000016732
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011517
Physical Location & Seq
Forward (+)
9506906 .. 9507751
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016732

Sequence Viewer

Length: 639 bp
ATGGTGGAGTTATGTGTTTCAGGAACAATGAAGAGTGACAATGGCTTCAAACCAGGAACATTTGTTCAAATTGAAAAGTTACTAGAGCAGAAGCTGCCGGGTAGTGGGATCAAAGCTAGTCCACATATTGAGTCTCGGAGTCATCCAGCAGCAAAGGGAATGTGGATGAAGCCTTTTCCTCATTTTGATAACTTGGGAAATGTCTTTGGAAAAGATCGTGCTAATGGAAAGCAAGCAGCAAGTGCTACTGATTATGTGAATGAGATCGATCAAAACAATGATGGCCTAGATGACATTGCTGAAGTAATGACTATCCCTCCACCTGTAGTAGTAGAAGGTTCCAATCAAGCTCCGAGGAATAGGAAAAGGAAGAGGACAGATGCATATGTACTAGGGTTGACCCAAATGGTTGGTGCAATGTCTAAGACTGCTGAAGCAATGGATAGGCTTGTGGGAAGTCTTGCAGAGCTTGATCCCATGCGTCAAGTTTATGATGAGGTATCCAAAGTTGAAGGTTTAAGTACCTCTTCTAAATTGAAAGTAAGTCAGATTATCATGGCTGATCCAATGAAAGTGAGTCTTCTTCTTAGTCTTCCTGGGGATGTTAAAAAAGAATGGGTGGAAGAATTGCTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

213

Amino Acids

23.2

Weight (kDa)

5.97

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 116, 467, 557
AcuI CTGAAG 2 cut(s) 321, 453
AfaI GTAC 2 cut(s) 390, 523
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 6 cut(s) 49, 68, 74, 512, 538, 635
AjnI CCWGG 2 cut(s) 52, 595
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 4 cut(s) 94, 116, 350, 469
AluI AGCT 4 cut(s) 94, 116, 350, 469
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 116, 467, 557
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 94, 149, 236
Asp700I GAANNNNTTC 1 cut(s) 630
AsuC2I CCSGG 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 572, 584
BbvI GCAGC 3 cut(s) 81, 161, 248
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 54, 597
BciVI GTATCC 1 cut(s) 511
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 4 cut(s) 83, 117, 287, 392
BfmI CTRYAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 3 cut(s) 95, 150, 237
BlsI GCNGC 3 cut(s) 96, 151, 238
Bme1390I CCNGG 3 cut(s) 54, 99, 597
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 3 cut(s) 54, 99, 597
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 572, 584
BpuMI CCSGG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 353, 596
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse3DI GCAATG 3 cut(s) 294, 423, 444
BseBI CCWGG 2 cut(s) 54, 597
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 353, 596
BseGI GGATG 3 cut(s) 142, 171, 607
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 3 cut(s) 294, 423, 444
BseXI GCAGC 3 cut(s) 81, 161, 248
BshFI GGCC 1 cut(s) 285
BshVI ATCGAT 1 cut(s) 267
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 6 cut(s) 108, 214, 264, 268, 472, 562
BspANI GGCC 1 cut(s) 285
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 3 cut(s) 116, 467, 557
BsrDI GCAATG 3 cut(s) 294, 423, 444
BssECI CCNNGG 2 cut(s) 353, 596
BssMI GATC 6 cut(s) 108, 214, 264, 268, 472, 562
Bst2UI CCWGG 2 cut(s) 54, 597
Bst6I CTCTTC 3 cut(s) 26, 365, 532
BstAPI GCANNNNNTGC 2 cut(s) 94, 242
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 423, 587
BstF5I GGATG 3 cut(s) 142, 171, 607
BstKTI GATC 6 cut(s) 111, 217, 267, 271, 475, 565
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 6 cut(s) 108, 214, 264, 268, 472, 562
BstMWI GCNNNNNNNGC 2 cut(s) 94, 242
BstNI CCWGG 2 cut(s) 54, 597
BstSCI CCNGG 3 cut(s) 52, 97, 595
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 81, 161, 248
BstV2I GAAGAC 2 cut(s) 572, 584
BstXI CCANNNNNNTGG 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 267
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 285
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 3 cut(s) 142, 171, 607
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 389, 522
CviAII CATG 2 cut(s) 478, 556
CviJI RGCY 9 cut(s) 45, 94, 116, 172, 285, 350, 448, 469, 560
CviKI_1 RGCY 9 cut(s) 45, 94, 116, 172, 285, 350, 448, 469, 560
CviQI GTAC 2 cut(s) 389, 522
DdeI CTNAG 2 cut(s) 423, 587
DpnI GATC 6 cut(s) 110, 216, 266, 270, 474, 564
DpnII GATC 6 cut(s) 108, 214, 264, 268, 472, 562
Eam1104I CTCTTC 3 cut(s) 26, 365, 532
EarI CTCTTC 3 cut(s) 26, 365, 532
Eco57I CTGAAG 2 cut(s) 321, 453
EcoRII CCWGG 2 cut(s) 52, 595
EcoT22I ATGCAT 1 cut(s) 385
FaeI CATG 2 cut(s) 481, 559
FaiI YATR 8 cut(s) 13, 126, 255, 385, 387, 479, 492, 557
FalI AAGNNNNNCTT 5 cut(s) 511, 543, 564, 596, 615
FatI CATG 2 cut(s) 477, 555
FauNDI CATATG 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 95, 150, 237
FokI GGATG 3 cut(s) 129, 178, 614
Fsp4HI GCNGC 3 cut(s) 95, 150, 237
FspBI CTAG 4 cut(s) 83, 117, 287, 392
GluI GCNGC 3 cut(s) 95, 150, 237
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 470
Hin1II CATG 2 cut(s) 481, 559
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 3 cut(s) 131, 139, 577
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 122, 399
Hpy188I TCNGA 3 cut(s) 138, 354, 549
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 122, 399
HpyAV CCTTC 2 cut(s) 329, 506
HpyCH4V TGCA 3 cut(s) 383, 416, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 242
HpyF3I CTNAG 2 cut(s) 423, 587
Hsp92II CATG 2 cut(s) 481, 559
Kzo9I GATC 6 cut(s) 108, 214, 264, 268, 472, 562
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 8 cut(s) 6, 39, 66, 111, 159, 336, 582, 609
Lsp1109I GCAGC 3 cut(s) 81, 161, 248
LweI GCATC 1 cut(s) 370
MaeI CTAG 4 cut(s) 83, 117, 287, 392
MaeIII GTNAC 2 cut(s) 35, 78
MalI GATC 6 cut(s) 110, 216, 266, 270, 474, 564
MboI GATC 6 cut(s) 108, 214, 264, 268, 472, 562
MboII GAAGA 7 cut(s) 43, 382, 519, 572, 575, 584, 635
MluCI AATT 3 cut(s) 69, 533, 626
MlyI GAGTC 3 cut(s) 140, 148, 586
MnlI CCTC 6 cut(s) 189, 327, 348, 366, 490, 535
Mph1103I ATGCAT 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 2 cut(s) 518, 606
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 3 cut(s) 54, 99, 597
MvaI CCWGG 2 cut(s) 54, 597
MwoI GCNNNNNNNGC 2 cut(s) 94, 242
NciI CCSGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 385
NdeII GATC 6 cut(s) 108, 214, 264, 268, 472, 562
NlaIII CATG 2 cut(s) 481, 559
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 630
PkrI GCNGC 3 cut(s) 96, 151, 238
PleI GAGTC 3 cut(s) 139, 147, 585
PpsI GAGTC 3 cut(s) 139, 147, 585
Psp6I CCWGG 2 cut(s) 52, 595
PspGI CCWGG 2 cut(s) 52, 595
PspN4I GGNNCC 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 390, 523
RsaNI GTAC 2 cut(s) 389, 522
SaqAI TTAA 2 cut(s) 518, 606
SatI GCNGC 3 cut(s) 95, 150, 237
Sau3AI GATC 6 cut(s) 108, 214, 264, 268, 472, 562
SchI GAGTC 3 cut(s) 140, 148, 586
ScrFI CCNGG 3 cut(s) 54, 99, 597
SetI ASST 9 cut(s) 96, 118, 325, 340, 352, 471, 501, 517, 527
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 3 cut(s) 69, 533, 626
SspMI CTAG 4 cut(s) 83, 117, 287, 392
StyD4I CCNGG 3 cut(s) 52, 97, 595
TaqI TCGA 1 cut(s) 267
TasI AATT 3 cut(s) 69, 533, 626
TatI WGTACW 1 cut(s) 388
Tru1I TTAA 2 cut(s) 518, 606
Tru9I TTAA 2 cut(s) 518, 606
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 3 cut(s) 94, 149, 236
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 44, 182, 584
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 4 cut(s) 83, 117, 287, 392
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.