DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 62, 152 |
| AcuI | CTGAAG | 1 cut(s) | 48 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AgsI | TTSAA | 4 cut(s) | 59, 107, 133, 230 |
| AjnI | CCWGG | 1 cut(s) | 190 |
| AluBI | AGCT | 1 cut(s) | 43 |
| AluI | AGCT | 1 cut(s) | 43 |
| AlwI | GGATC | 2 cut(s) | 62, 152 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 225 |
| BbsI | GAAGAC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 1 cut(s) | 192 |
| BciVI | GTATCC | 1 cut(s) | 106 |
| BfuI | GTATCC | 1 cut(s) | 106 |
| Bme1390I | CCNGG | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 192 |
| BpiI | GAAGAC | 1 cut(s) | 179 |
| BpmI | CTGGAG | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 2 cut(s) | 18, 39 |
| BseBI | CCWGG | 1 cut(s) | 192 |
| BseMI | GCAATG | 2 cut(s) | 18, 39 |
| BseMII | CTCAG | 1 cut(s) | 196 |
| Bsp143I | GATC | 2 cut(s) | 67, 157 |
| BspCNI | CTCAG | 1 cut(s) | 195 |
| BspPI | GGATC | 2 cut(s) | 62, 152 |
| BsrDI | GCAATG | 2 cut(s) | 18, 39 |
| BssMI | GATC | 2 cut(s) | 67, 157 |
| Bst2UI | CCWGG | 1 cut(s) | 192 |
| Bst6I | CTCTTC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstKTI | GATC | 2 cut(s) | 70, 160 |
| BstMBI | GATC | 2 cut(s) | 67, 157 |
| BstNI | CCWGG | 1 cut(s) | 192 |
| BstSCI | CCNGG | 1 cut(s) | 190 |
| BstV2I | GAAGAC | 1 cut(s) | 179 |
| BsuI | GTATCC | 1 cut(s) | 106 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CviAII | CATG | 1 cut(s) | 151 |
| CviJI | RGCY | 2 cut(s) | 43, 155 |
| CviKI_1 | RGCY | 2 cut(s) | 43, 155 |
| CviQI | GTAC | 1 cut(s) | 117 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 2 cut(s) | 69, 159 |
| DpnII | GATC | 2 cut(s) | 67, 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 1 cut(s) | 127 |
| Eco57I | CTGAAG | 1 cut(s) | 48 |
| EcoRII | CCWGG | 1 cut(s) | 190 |
| FaeI | CATG | 1 cut(s) | 154 |
| FaiI | YATR | 3 cut(s) | 74, 87, 152 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 106, 138 |
| FatI | CATG | 1 cut(s) | 150 |
| GsuI | CTGGAG | 1 cut(s) | 213 |
| HgaI | GACGC | 1 cut(s) | 65 |
| Hin1II | CATG | 1 cut(s) | 154 |
| HindIII | AAGCTT | 1 cut(s) | 41 |
| Hpy188I | TCNGA | 1 cut(s) | 144 |
| Hpy188III | TCNNGA | 1 cut(s) | 56 |
| HpyAV | CCTTC | 1 cut(s) | 101 |
| HpyCH4V | TGCA | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| Hsp92II | CATG | 1 cut(s) | 154 |
| Kzo9I | GATC | 2 cut(s) | 67, 157 |
| LpnPI | CCDG | 2 cut(s) | 177, 204 |
| MalI | GATC | 2 cut(s) | 69, 159 |
| MboI | GATC | 2 cut(s) | 67, 157 |
| MboII | GAAGA | 4 cut(s) | 71, 114, 170, 179 |
| MluCI | AATT | 3 cut(s) | 128, 167, 221 |
| MnlI | CCTC | 3 cut(s) | 85, 130, 211 |
| MroXI | GAANNNNTTC | 1 cut(s) | 225 |
| MseI | TTAA | 2 cut(s) | 113, 201 |
| MspR9I | CCNGG | 1 cut(s) | 192 |
| MvaI | CCWGG | 1 cut(s) | 192 |
| NdeII | GATC | 2 cut(s) | 67, 157 |
| NlaIII | CATG | 1 cut(s) | 154 |
| PdmI | GAANNNNTTC | 1 cut(s) | 225 |
| PfoI | TCCNGGA | 1 cut(s) | 190 |
| Psp6I | CCWGG | 1 cut(s) | 190 |
| PspGI | CCWGG | 1 cut(s) | 190 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| SaqAI | TTAA | 2 cut(s) | 113, 201 |
| Sau3AI | GATC | 2 cut(s) | 67, 157 |
| ScrFI | CCNGG | 1 cut(s) | 192 |
| SetI | ASST | 4 cut(s) | 45, 96, 112, 122 |
| SgeI | CNNG | 8 cut(s) | 31, 56, 68, 77, 92, 163, 203, 204 |
| Sse9I | AATT | 3 cut(s) | 128, 167, 221 |
| StyD4I | CCNGG | 1 cut(s) | 190 |
| TasI | AATT | 3 cut(s) | 128, 167, 221 |
| Tru1I | TTAA | 2 cut(s) | 113, 201 |
| Tru9I | TTAA | 2 cut(s) | 113, 201 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| XmnI | GAANNNNTTC | 1 cut(s) | 225 |