DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 161, 251 |
| AcuI | CTGAAG | 1 cut(s) | 147 |
| AfaI | GTAC | 2 cut(s) | 84, 217 |
| AgsI | TTSAA | 3 cut(s) | 206, 232, 317 |
| AluBI | AGCT | 2 cut(s) | 44, 163 |
| AluI | AGCT | 2 cut(s) | 44, 163 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| AlwI | GGATC | 2 cut(s) | 161, 251 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 312 |
| BanII | GRGCYC | 1 cut(s) | 165 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BciVI | GTATCC | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 86 |
| BfuI | GTATCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 1 cut(s) | 34 |
| BmsI | GCATC | 3 cut(s) | 64, 97, 184 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 47 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 25 |
| Bse3DI | GCAATG | 2 cut(s) | 117, 138 |
| BseDI | CCNNGG | 1 cut(s) | 47 |
| BseMI | GCAATG | 2 cut(s) | 117, 138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 165 |
| Bsp143I | GATC | 2 cut(s) | 166, 256 |
| BspLI | GGNNCC | 1 cut(s) | 34 |
| BspPI | GGATC | 2 cut(s) | 161, 251 |
| BsrDI | GCAATG | 2 cut(s) | 117, 138 |
| BssECI | CCNNGG | 1 cut(s) | 47 |
| BssMI | GATC | 2 cut(s) | 166, 256 |
| BssT1I | CCWWGG | 1 cut(s) | 47 |
| Bst6I | CTCTTC | 2 cut(s) | 59, 226 |
| BstKTI | GATC | 2 cut(s) | 169, 259 |
| BstMBI | GATC | 2 cut(s) | 166, 256 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BsuI | GTATCC | 1 cut(s) | 205 |
| Csp6I | GTAC | 2 cut(s) | 83, 216 |
| CviAII | CATG | 2 cut(s) | 172, 250 |
| CviJI | RGCY | 4 cut(s) | 44, 142, 163, 254 |
| CviKI_1 | RGCY | 4 cut(s) | 44, 142, 163, 254 |
| CviQI | GTAC | 2 cut(s) | 83, 216 |
| DpnI | GATC | 2 cut(s) | 168, 258 |
| DpnII | GATC | 2 cut(s) | 166, 256 |
| Eam1104I | CTCTTC | 2 cut(s) | 59, 226 |
| EarI | CTCTTC | 2 cut(s) | 59, 226 |
| Ecl136II | GAGCTC | 1 cut(s) | 163 |
| Eco130I | CCWWGG | 1 cut(s) | 47 |
| Eco24I | GRGCYC | 1 cut(s) | 165 |
| Eco53kI | GAGCTC | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 1 cut(s) | 147 |
| EcoICRI | GAGCTC | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 1 cut(s) | 47 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 1 cut(s) | 165 |
| ErhI | CCWWGG | 1 cut(s) | 47 |
| FaeI | CATG | 2 cut(s) | 175, 253 |
| FaiI | YATR | 4 cut(s) | 81, 173, 186, 251 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 205, 237, 258, 290, 297 |
| FatI | CATG | 2 cut(s) | 171, 249 |
| FriOI | GRGCYC | 1 cut(s) | 165 |
| FspBI | CTAG | 1 cut(s) | 86 |
| Hin1II | CATG | 2 cut(s) | 175, 253 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HinfI | GANTC | 1 cut(s) | 271 |
| Hpy166II | GTNNAC | 1 cut(s) | 93 |
| Hpy188I | TCNGA | 1 cut(s) | 243 |
| Hpy8I | GTNNAC | 1 cut(s) | 93 |
| HpyAV | CCTTC | 2 cut(s) | 23, 200 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 158, 175 |
| Hsp92II | CATG | 2 cut(s) | 175, 253 |
| Kzo9I | GATC | 2 cut(s) | 166, 256 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LweI | GCATC | 3 cut(s) | 64, 97, 184 |
| MaeI | CTAG | 1 cut(s) | 86 |
| MalI | GATC | 2 cut(s) | 168, 258 |
| MboI | GATC | 2 cut(s) | 166, 256 |
| MboII | GAAGA | 4 cut(s) | 76, 213, 266, 317 |
| MhlI | GDGCHC | 1 cut(s) | 165 |
| MluCI | AATT | 2 cut(s) | 227, 308 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MnlI | CCTC | 4 cut(s) | 21, 60, 184, 229 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 312 |
| MseI | TTAA | 2 cut(s) | 212, 288 |
| NdeII | GATC | 2 cut(s) | 166, 256 |
| NlaIII | CATG | 2 cut(s) | 175, 253 |
| NlaIV | GGNNCC | 1 cut(s) | 34 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| PdmI | GAANNNNTTC | 1 cut(s) | 312 |
| PleI | GAGTC | 1 cut(s) | 279 |
| PpsI | GAGTC | 1 cut(s) | 279 |
| Psp124BI | GAGCTC | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 1 cut(s) | 34 |
| RsaI | GTAC | 2 cut(s) | 84, 217 |
| RsaNI | GTAC | 2 cut(s) | 83, 216 |
| SacI | GAGCTC | 1 cut(s) | 165 |
| SaqAI | TTAA | 2 cut(s) | 212, 288 |
| Sau3AI | GATC | 2 cut(s) | 166, 256 |
| SchI | GAGTC | 1 cut(s) | 280 |
| SduI | GDGCHC | 1 cut(s) | 165 |
| SetI | ASST | 6 cut(s) | 34, 46, 165, 195, 211, 221 |
| SfaNI | GCATC | 3 cut(s) | 64, 97, 184 |
| Sse9I | AATT | 2 cut(s) | 227, 308 |
| SspMI | CTAG | 1 cut(s) | 86 |
| SstI | GAGCTC | 1 cut(s) | 165 |
| StyI | CCWWGG | 1 cut(s) | 47 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TasI | AATT | 2 cut(s) | 227, 308 |
| TatI | WGTACW | 1 cut(s) | 82 |
| Tru1I | TTAA | 2 cut(s) | 212, 288 |
| Tru9I | TTAA | 2 cut(s) | 212, 288 |
| TspDTI | ATGAA | 1 cut(s) | 278 |
| XmnI | GAANNNNTTC | 1 cut(s) | 312 |
| XspI | CTAG | 1 cut(s) | 86 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |