Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006124.1

Orthogroup ID

OG0011517

Physical Location & Seq

Genomic Coordinates Reverse (-)

15701 .. 16432

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006124.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtggaggtatgtgtttcaggaacaataaagagtgaaaatggtttcaaaccaggaacatttattcaaattgaaaagttactagagcagaagttgctgggtaatgggatcaaagctagtccacatattgagtctcgggtaaagacactaaagaaacaatataatgctatatcagatatgattgtcaccagcagtggtttttcatgggatgatgagaagaaaatgatcatttgtgaaaagaatttgtatgatggttgggtgaagccttttcctcattttgataacttgggaaatgtctttggaaaagatcgtgctaatggaaagcaagcagcaagtgctactgattatgtggatgagatcgatcaaaacaatgatggcctagatgacattgctgaagtaatgactatccctccacctgtagtagtagaaggttccaatcaagctccaaggaataggaaaaggaataggacagatgcatatgtactagggttgacccaaatggttggtacaatgtccaagactgttgaagcaatggatgggcttgtgggaagtcttgcagagcttgatctcatgcgtcaagtctatgatgaggtatccaaagttgtccaagactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

205

Amino Acids

22.69

Weight (kDa)

5.05

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28531 FvH4_4g08331
rosa_chinensis	RchiOBHm_Chr7g0205671
rosa_laevigata	RLG00000016732 RLG00000019543
rosa_multiflora	Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092690 Rroxscaffold_3G00250230
rosa_samantha	Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	483, 508
AgsI	TTSAA	4 cut(s)	49, 68, 74, 527
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	3 cut(s)	116, 443, 562
AluI	AGCT	3 cut(s)	116, 443, 562
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	178, 271
AvaI	CYCGRG	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	3 cut(s)	245, 368, 530
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	604
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	4 cut(s)	83, 117, 380, 485
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	463
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse3DI	GCAATG	2 cut(s)	387, 537
BseBI	CCWGG	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	3 cut(s)	214, 358, 541
BseMI	GCAATG	2 cut(s)	387, 537
BseXI	GCAGC	1 cut(s)	341
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	378
BshVI	ATCGAT	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
BspANI	GGCC	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	387, 537
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	523
BstAPI	GCANNNNNTGC	2 cut(s)	94, 335
BstC8I	GCNNGC	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	214, 358, 541
BstKTI	GATC	6 cut(s)	111, 228, 310, 360, 364, 568
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 335
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	503
Bsu15I	ATCGAT	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	214, 358, 541
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	482, 507
CviAII	CATG	2 cut(s)	204, 571
CviJI	RGCY	6 cut(s)	116, 265, 378, 443, 541, 562
CviKI_1	RGCY	6 cut(s)	116, 265, 378, 443, 541, 562
CviQI	GTAC	2 cut(s)	482, 507
DpnI	GATC	6 cut(s)	110, 227, 309, 359, 363, 567
DpnII	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
Eco130I	CCWWGG	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	2 cut(s)	207, 574
FatI	CATG	2 cut(s)	203, 570
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	221, 365, 548
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	4 cut(s)	83, 117, 380, 485
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	378
HgaI	GACGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	207, 574
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	178, 271
Hpy166II	GTNNAC	2 cut(s)	122, 492
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	2 cut(s)	122, 492
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	2 cut(s)	476, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 335
Hsp92II	CATG	2 cut(s)	207, 574
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	6 cut(s)	6, 39, 66, 83, 202, 429
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	4 cut(s)	83, 117, 380, 485
MaeIII	GTNAC	2 cut(s)	78, 184
MalI	GATC	6 cut(s)	110, 227, 309, 359, 363, 567
MboI	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
MboII	GAAGA	1 cut(s)	229
MluCI	AATT	2 cut(s)	69, 241
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	3 cut(s)	282, 420, 583
Mph1103I	ATGCAT	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	94, 335
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
NlaIII	CATG	2 cut(s)	207, 574
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	483, 508
RsaNI	GTAC	2 cut(s)	482, 507
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	6 cut(s)	108, 225, 307, 357, 361, 565
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	7 cut(s)	12, 118, 418, 433, 445, 564, 594
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	69, 241
SspMI	CTAG	4 cut(s)	83, 117, 380, 485
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	69, 241
TatI	WGTACW	1 cut(s)	481
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	4 cut(s)	83, 117, 380, 485
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.