DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 189 |
| AclWI | GGATC | 2 cut(s) | 62, 112 |
| AcuI | CTGAAG | 2 cut(s) | 48, 185 |
| AgsI | TTSAA | 1 cut(s) | 134 |
| AluBI | AGCT | 2 cut(s) | 43, 106 |
| AluI | AGCT | 2 cut(s) | 43, 106 |
| AlwI | GGATC | 2 cut(s) | 62, 112 |
| AoxI | GGCC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 139 |
| BisI | GCNGC | 1 cut(s) | 190 |
| BlsI | GCNGC | 1 cut(s) | 191 |
| BmiI | GGNNCC | 2 cut(s) | 142, 148 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 2 cut(s) | 121, 150 |
| BsaWI | WCCGGW | 1 cut(s) | 143 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseDI | CCNNGG | 2 cut(s) | 121, 150 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BshFI | GGCC | 1 cut(s) | 126 |
| BsiSI | CCGG | 1 cut(s) | 144 |
| BsnI | GGCC | 1 cut(s) | 126 |
| Bsp143I | GATC | 3 cut(s) | 67, 117, 160 |
| BspACI | CCGC | 1 cut(s) | 189 |
| BspANI | GGCC | 1 cut(s) | 126 |
| BspLI | GGNNCC | 2 cut(s) | 142, 148 |
| BspPI | GGATC | 2 cut(s) | 62, 112 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 2 cut(s) | 121, 150 |
| BssMI | GATC | 3 cut(s) | 67, 117, 160 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstDSI | CCRYGG | 1 cut(s) | 121 |
| BstKTI | GATC | 3 cut(s) | 70, 120, 163 |
| BstMBI | GATC | 3 cut(s) | 67, 117, 160 |
| BsuRI | GGCC | 1 cut(s) | 126 |
| BtgI | CCRYGG | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| CseI | GACGC | 1 cut(s) | 65 |
| CviAII | CATG | 2 cut(s) | 73, 164 |
| CviJI | RGCY | 4 cut(s) | 43, 106, 126, 149 |
| CviKI_1 | RGCY | 4 cut(s) | 43, 106, 126, 149 |
| DpnI | GATC | 3 cut(s) | 69, 119, 162 |
| DpnII | GATC | 3 cut(s) | 67, 117, 160 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 185 |
| FaeI | CATG | 2 cut(s) | 76, 167 |
| FaiI | YATR | 4 cut(s) | 47, 74, 87, 165 |
| FatI | CATG | 2 cut(s) | 72, 163 |
| Fnu4HI | GCNGC | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 1 cut(s) | 190 |
| GluI | GCNGC | 1 cut(s) | 190 |
| HaeIII | GGCC | 1 cut(s) | 126 |
| HapII | CCGG | 1 cut(s) | 144 |
| HgaI | GACGC | 1 cut(s) | 65 |
| Hin1II | CATG | 2 cut(s) | 76, 167 |
| HindIII | AAGCTT | 2 cut(s) | 41, 104 |
| HinfI | GANTC | 1 cut(s) | 171 |
| HpaII | CCGG | 1 cut(s) | 144 |
| Hpy188I | TCNGA | 2 cut(s) | 170, 204 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 59, 100 |
| Hsp92II | CATG | 2 cut(s) | 76, 167 |
| Kzo9I | GATC | 3 cut(s) | 67, 117, 160 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 1 cut(s) | 157 |
| LweI | GCATC | 1 cut(s) | 103 |
| MalI | GATC | 3 cut(s) | 69, 119, 162 |
| MboI | GATC | 3 cut(s) | 67, 117, 160 |
| MboII | GAAGA | 2 cut(s) | 170, 191 |
| MluCI | AATT | 1 cut(s) | 205 |
| MlyI | GAGTC | 1 cut(s) | 165 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| MnlI | CCTC | 1 cut(s) | 145 |
| MspI | CCGG | 1 cut(s) | 144 |
| NdeII | GATC | 3 cut(s) | 67, 117, 160 |
| NlaIII | CATG | 2 cut(s) | 76, 167 |
| NlaIV | GGNNCC | 2 cut(s) | 142, 148 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| PkrI | GCNGC | 1 cut(s) | 191 |
| PleI | GAGTC | 1 cut(s) | 165 |
| PpsI | GAGTC | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 2 cut(s) | 142, 148 |
| SatI | GCNGC | 1 cut(s) | 190 |
| Sau3AI | GATC | 3 cut(s) | 67, 117, 160 |
| SchI | GAGTC | 1 cut(s) | 165 |
| SetI | ASST | 4 cut(s) | 45, 108, 139, 183 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| Sse9I | AATT | 1 cut(s) | 205 |
| SsiI | CCGC | 1 cut(s) | 189 |
| TaqI | TCGA | 1 cut(s) | 174 |
| TasI | AATT | 1 cut(s) | 205 |
| TauI | GCSGC | 1 cut(s) | 192 |