DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28531 FvH4_4g08331 |
| rosa_chinensis | RchiOBHm_Chr7g0205671 |
| rosa_laevigata | RLG00000016732 RLG00000019543 |
| rosa_multiflora | Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00092690 Rroxscaffold_3G00250230 |
| rosa_samantha | Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 272 |
| AcuI | CTGAAG | 2 cut(s) | 126, 258 |
| AfaI | GTAC | 2 cut(s) | 195, 329 |
| AgsI | TTSAA | 2 cut(s) | 229, 317 |
| AluBI | AGCT | 3 cut(s) | 41, 155, 253 |
| AluI | AGCT | 3 cut(s) | 41, 155, 253 |
| AlwI | GGATC | 1 cut(s) | 272 |
| AoxI | GGCC | 1 cut(s) | 88 |
| ApeKI | GCWGC | 1 cut(s) | 41 |
| AseI | ATTAAT | 1 cut(s) | 72 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| BbvI | GCAGC | 1 cut(s) | 28 |
| BccI | CCATC | 1 cut(s) | 80 |
| BciVI | GTATCC | 1 cut(s) | 316 |
| BfaI | CTAG | 1 cut(s) | 197 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BfuI | GTATCC | 1 cut(s) | 316 |
| BisI | GCNGC | 1 cut(s) | 42 |
| BlsI | GCNGC | 1 cut(s) | 43 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BmiI | GGNNCC | 1 cut(s) | 145 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 1 cut(s) | 158 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 106, 136 |
| Bse3DI | GCAATG | 3 cut(s) | 99, 228, 249 |
| Bse8I | GATNNNNATC | 1 cut(s) | 116 |
| BseDI | CCNNGG | 1 cut(s) | 158 |
| BseGI | GGATG | 1 cut(s) | 70 |
| BseJI | GATNNNNATC | 1 cut(s) | 116 |
| BseMI | GCAATG | 3 cut(s) | 99, 228, 249 |
| BseXI | GCAGC | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 90 |
| BsnI | GGCC | 1 cut(s) | 90 |
| Bsp143I | GATC | 2 cut(s) | 19, 277 |
| BspANI | GGCC | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 145 |
| BspPI | GGATC | 1 cut(s) | 272 |
| BsrDI | GCAATG | 3 cut(s) | 99, 228, 249 |
| BssECI | CCNNGG | 1 cut(s) | 158 |
| BssMI | GATC | 2 cut(s) | 19, 277 |
| BssT1I | CCWWGG | 1 cut(s) | 158 |
| Bst6I | CTCTTC | 1 cut(s) | 170 |
| BstC8I | GCNNGC | 2 cut(s) | 8, 39 |
| BstF5I | GGATG | 1 cut(s) | 70 |
| BstKTI | GATC | 2 cut(s) | 22, 280 |
| BstMBI | GATC | 2 cut(s) | 19, 277 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 47 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 28 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BsuI | GTATCC | 1 cut(s) | 316 |
| BsuRI | GGCC | 1 cut(s) | 90 |
| BtsCI | GGATG | 1 cut(s) | 70 |
| BtsIMutI | CAGTG | 1 cut(s) | 51 |
| Cac8I | GCNNGC | 2 cut(s) | 8, 39 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| CseI | GACGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 2 cut(s) | 194, 328 |
| CviAII | CATG | 1 cut(s) | 283 |
| CviJI | RGCY | 4 cut(s) | 41, 90, 155, 253 |
| CviKI_1 | RGCY | 4 cut(s) | 41, 90, 155, 253 |
| CviQI | GTAC | 2 cut(s) | 194, 328 |
| DpnI | GATC | 2 cut(s) | 21, 279 |
| DpnII | GATC | 2 cut(s) | 19, 277 |
| Eam1104I | CTCTTC | 1 cut(s) | 170 |
| EarI | CTCTTC | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 1 cut(s) | 158 |
| Eco57I | CTGAAG | 2 cut(s) | 126, 258 |
| EcoT14I | CCWWGG | 1 cut(s) | 158 |
| EcoT22I | ATGCAT | 1 cut(s) | 190 |
| ErhI | CCWWGG | 1 cut(s) | 158 |
| FaeI | CATG | 1 cut(s) | 286 |
| FaiI | YATR | 5 cut(s) | 60, 190, 192, 284, 297 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 317 |
| FatI | CATG | 1 cut(s) | 282 |
| FauNDI | CATATG | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 1 cut(s) | 42 |
| FokI | GGATG | 1 cut(s) | 77 |
| Fsp4HI | GCNGC | 1 cut(s) | 42 |
| FspBI | CTAG | 1 cut(s) | 197 |
| GluI | GCNGC | 1 cut(s) | 42 |
| HaeIII | GGCC | 1 cut(s) | 90 |
| HgaI | GACGC | 1 cut(s) | 275 |
| Hin1II | CATG | 1 cut(s) | 286 |
| HindIII | AAGCTT | 1 cut(s) | 251 |
| HpyAV | CCTTC | 2 cut(s) | 134, 311 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 188, 221, 269 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 47 |
| Hsp92II | CATG | 1 cut(s) | 286 |
| Kzo9I | GATC | 2 cut(s) | 19, 277 |
| LmnI | GCTCC | 1 cut(s) | 160 |
| LpnPI | CCDG | 2 cut(s) | 105, 141 |
| Lsp1109I | GCAGC | 1 cut(s) | 28 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 1 cut(s) | 197 |
| MalI | GATC | 2 cut(s) | 21, 279 |
| MboI | GATC | 2 cut(s) | 19, 277 |
| MboII | GAAGA | 3 cut(s) | 187, 241, 325 |
| MnlI | CCTC | 3 cut(s) | 132, 171, 295 |
| Mph1103I | ATGCAT | 1 cut(s) | 190 |
| MseI | TTAA | 3 cut(s) | 27, 72, 324 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 47 |
| NdeI | CATATG | 1 cut(s) | 190 |
| NdeII | GATC | 2 cut(s) | 19, 277 |
| NlaIII | CATG | 1 cut(s) | 286 |
| NlaIV | GGNNCC | 1 cut(s) | 145 |
| NsiI | ATGCAT | 1 cut(s) | 190 |
| PkrI | GCNGC | 1 cut(s) | 43 |
| PshBI | ATTAAT | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 145 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| RsaI | GTAC | 2 cut(s) | 195, 329 |
| RsaNI | GTAC | 2 cut(s) | 194, 328 |
| SaqAI | TTAA | 3 cut(s) | 27, 72, 324 |
| SatI | GCNGC | 1 cut(s) | 42 |
| Sau3AI | GATC | 2 cut(s) | 19, 277 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SetI | ASST | 9 cut(s) | 43, 130, 145, 157, 202, 255, 306, 322, 333 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SspMI | CTAG | 1 cut(s) | 197 |
| StyI | CCWWGG | 1 cut(s) | 158 |
| TatI | WGTACW | 1 cut(s) | 193 |
| Tru1I | TTAA | 3 cut(s) | 27, 72, 324 |
| Tru9I | TTAA | 3 cut(s) | 27, 72, 324 |
| TscAI | CASTG | 1 cut(s) | 58 |
| TseI | GCWGC | 1 cut(s) | 41 |
| TspRI | CASTG | 1 cut(s) | 58 |
| VspI | ATTAAT | 1 cut(s) | 72 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 58 |
| XspI | CTAG | 1 cut(s) | 197 |
| Zsp2I | ATGCAT | 1 cut(s) | 190 |