FvH4_1g28531
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011517
Physical Location & Seq
Forward (+)
20723139 .. 20723965
827 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28531.t1

Sequence Viewer

Length: 747 bp
ATGAAGAGTGACAATGGTTTCAAACCAGGAACATTTGTTCAAATTGAAAAGTTACTAGAGCAAAAGTTACCAGGTAGCGGGATCAAAGCCAGTCCACATATTGAGTCTCGGGTGAAGACTCTAAAGAAACAATATAATGCTATAACAGATATGATTGTCACCAGCAGTGGTTTTTCATGGAATGATGAGAAGAAAATGATCATATGCAAAAAAGATCTGTATGACGGTTGGGTGAAGAGTCATCCAGCAGCAAAAGGAATGTGGATGAAGCCTTTTTCTCATTTTGACAACTTGGGAAATGTCTTTGGTAAAGATCATGCAAATGGAAAGCAAGCAGCCAATGCTACTGATTATATTGATGAGATTGATCTAAACAATGACGGCCTAGAAGAAATTGCTGAAATGATGACTACTCCTCCACCTGTAGCACCTGTAGCAGTAGAAGGTCAAAATGAAGCTCCAAGGAATAGGAAGAGGAAGAGGACATATGCATATGTTCTAGGGCTGACACAAATGGTTGGTGCAATGTCTAAGACTACTGAAGCAATGGATAAGCTTGTGGGAAGTCTTGTAGAATTTGATCCCATGCGTCAAGTCTATGATAAGGTATCAAAAGTTGAAGGTTTAAGTACCTTGTCTAAACTGAAAGTAAGTCAGATTATCATGGCTAATCCTGTGAAAGTCAGTCTTCTTCTCAGTCTTCCTGAAGATGTTAAAAAAGAATGGGTGGAGGAATTGCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

249

Amino Acids

27.69

Weight (kDa)

8.41

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 3 - 73 2e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 89, 575
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 3 cut(s) 561, 725, 726
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 22, 41, 47, 620
AjnI CCWGG 2 cut(s) 25, 70
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 458, 556
AluI AGCT 2 cut(s) 458, 556
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 89, 575
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 248, 335
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 738
AsuHPI GGTGA 3 cut(s) 124, 151, 244
AvaI CYCGRG 1 cut(s) 108
BbsI GAAGAC 3 cut(s) 122, 680, 692
BbvI GCAGC 2 cut(s) 260, 347
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 27, 72
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 56, 386, 500
BfmI CTRYAG 2 cut(s) 423, 432
BglII AGATCT 1 cut(s) 214
BisI GCNGC 2 cut(s) 249, 336
BlsI GCNGC 2 cut(s) 250, 337
Bme1390I CCNGG 2 cut(s) 27, 72
BmeT110I CYCGRG 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 27, 72
BpiI GAAGAC 3 cut(s) 122, 680, 692
BsaJI CCNNGG 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 2 cut(s) 531, 552
BseBI CCWGG 2 cut(s) 27, 72
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 2 cut(s) 241, 270
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 531, 552
BseMII CTCAG 1 cut(s) 709
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 260, 347
BshFI GGCC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 108
Bsp143I GATC 6 cut(s) 81, 198, 214, 313, 367, 580
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 708
BspPI GGATC 2 cut(s) 89, 575
BsrDI GCAATG 2 cut(s) 531, 552
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 6 cut(s) 81, 198, 214, 313, 367, 580
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 2 cut(s) 27, 72
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 230, 467, 473
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 531, 695
BstF5I GGATG 2 cut(s) 241, 270
BstKTI GATC 6 cut(s) 84, 201, 217, 316, 370, 583
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 6 cut(s) 81, 198, 214, 313, 367, 580
BstMWI GCNNNNNNNGC 2 cut(s) 341, 434
BstNI CCWGG 2 cut(s) 27, 72
BstSCI CCNGG 2 cut(s) 25, 70
BstSFI CTRYAG 2 cut(s) 423, 432
BstV1I GCAGC 2 cut(s) 260, 347
BstV2I GAAGAC 3 cut(s) 122, 680, 692
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 241, 270
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 333
CseI GACGC 1 cut(s) 578
CsiI ACCWGGT 1 cut(s) 70
Csp6I GTAC 1 cut(s) 630
CviAII CATG 4 cut(s) 177, 317, 586, 664
CviJI RGCY 8 cut(s) 89, 271, 338, 384, 458, 505, 556, 668
CviKI_1 RGCY 8 cut(s) 89, 271, 338, 384, 458, 505, 556, 668
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 2 cut(s) 531, 695
DpnI GATC 6 cut(s) 83, 200, 216, 315, 369, 582
DpnII GATC 6 cut(s) 81, 198, 214, 313, 367, 580
Eam1104I CTCTTC 3 cut(s) 230, 467, 473
EarI CTCTTC 3 cut(s) 230, 467, 473
Eco130I CCWWGG 1 cut(s) 461
Eco57I CTGAAG 3 cut(s) 561, 725, 726
Eco88I CYCGRG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 25, 70
EcoT14I CCWWGG 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 4 cut(s) 180, 320, 589, 667
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 4 cut(s) 176, 316, 585, 663
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 3 cut(s) 203, 487, 493
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 249, 336
FokI GGATG 2 cut(s) 228, 277
Fsp4HI GCNGC 2 cut(s) 249, 336
FspBI CTAG 3 cut(s) 56, 386, 500
GluI GCNGC 2 cut(s) 249, 336
HaeIII GGCC 1 cut(s) 384
HgaI GACGC 1 cut(s) 578
Hin1II CATG 4 cut(s) 180, 320, 589, 667
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 3 cut(s) 104, 118, 238
HphI GGTGA 3 cut(s) 124, 151, 244
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 657
Hpy188III TCNNGA 1 cut(s) 704
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 437, 614
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 207, 320, 491, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 434
HpyF3I CTNAG 2 cut(s) 531, 695
Hsp92II CATG 4 cut(s) 180, 320, 589, 667
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 6 cut(s) 81, 198, 214, 313, 367, 580
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 260, 347
MabI ACCWGGT 1 cut(s) 70
MaeI CTAG 3 cut(s) 56, 386, 500
MaeIII GTNAC 4 cut(s) 8, 51, 66, 157
MalI GATC 6 cut(s) 83, 200, 216, 315, 369, 582
MboI GATC 6 cut(s) 81, 198, 214, 313, 367, 580
MflI RGATCY 1 cut(s) 214
MluCI AATT 4 cut(s) 42, 393, 575, 734
MlyI GAGTC 3 cut(s) 112, 113, 247
MnlI CCTC 4 cut(s) 426, 468, 474, 724
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 626, 714
MslI CAYNNNNRTG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 27, 72
MvaI CCWGG 2 cut(s) 27, 72
MwoI GCNNNNNNNGC 2 cut(s) 341, 434
NdeI CATATG 3 cut(s) 203, 487, 493
NdeII GATC 6 cut(s) 81, 198, 214, 313, 367, 580
NlaIII CATG 4 cut(s) 180, 320, 589, 667
NmuCI GTSAC 2 cut(s) 8, 157
NsiI ATGCAT 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 738
PkrI GCNGC 2 cut(s) 250, 337
PleI GAGTC 3 cut(s) 112, 112, 246
PpsI GAGTC 3 cut(s) 112, 112, 246
Psp6I CCWGG 2 cut(s) 25, 70
PspGI CCWGG 2 cut(s) 25, 70
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 626, 714
SatI GCNGC 2 cut(s) 249, 336
Sau3AI GATC 6 cut(s) 81, 198, 214, 313, 367, 580
SchI GAGTC 3 cut(s) 112, 113, 247
ScrFI CCNGG 2 cut(s) 27, 72
SetI ASST 9 cut(s) 76, 424, 433, 448, 460, 558, 609, 625, 635
SexAI ACCWGGT 1 cut(s) 70
SfcI CTRYAG 2 cut(s) 423, 432
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 4 cut(s) 42, 393, 575, 734
SsiI CCGC 1 cut(s) 78
SspMI CTAG 3 cut(s) 56, 386, 500
StyD4I CCNGG 2 cut(s) 25, 70
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 1 cut(s) 227
TasI AATT 4 cut(s) 42, 393, 575, 734
Tru1I TTAA 2 cut(s) 626, 714
Tru9I TTAA 2 cut(s) 626, 714
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 8, 157
TseI GCWGC 2 cut(s) 248, 335
Tsp45I GTSAC 2 cut(s) 8, 157
TspDTI ATGAA 4 cut(s) 17, 165, 281, 468
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 3 cut(s) 56, 386, 500
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.