Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011517

Physical Location & Seq

Genomic Coordinates Reverse (-)

20966781 .. 20982622

Gene Structure 15842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCGTGATTCAAGGCTCCAAGAGGTAGGATCCTCTACTGCCTCGGAAGAAACTGGTATTACTGCAGCATTGCCGCCTAGTATGATGTCATCAGATGAAGACCCTAGTCTGGAGAAGGTGCTCTACAGCGCTGCGAGAAGCAATCGAATGAATCGATTCAGGATTTACTTATTTGCTTGCACATGGGGATGTGGGAGTCATCCAGTAGCAAAGGGAATGTGGATGAAGCCTTTTCCTCATTTTGATAACTTGGGAAATGTCTTTGGAAAAGATCGTGTTAATGGAAAGCAAACAGCAAGTGCTACTGATTATGTGGATGAGATCGATCAAAACAATGATGGCCTAGATGACATCGCTGAAGTAATGAATATCCCTCCACCTGTAGTAGTAGTAGAAGGTTCCAATCAAGCTCCAAGGAATAGGAAGATGAAGAGGACAAATGCATATGTACTAGGGTTGACCCAAATGGTTGGTGCAATGTCCAAGACTACTGAAGCAATGGATAGGCTTGTGGGAAGTCTTGTAGAGCTTGATCCCATGCGTCAAGTCTATGATGAGGTATCCAAAATTGAAGGTTTAAGTACCTCTTCTAAATTGAAAGTAAGTCAGATTATCATGGCTGATCCAATGAAAGAAGGAAGTGTGGCTATATCATCGTTACTATATCGGATGAATGAGGTCGTGAATGACACACTAGATATTATACTGACGAATTATGTACAAGACACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

244

Amino Acids

26.94

Weight (kDa)

4.91

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28531 FvH4_4g08331
rosa_chinensis	RchiOBHm_Chr7g0205671
rosa_laevigata	RLG00000016732 RLG00000019543
rosa_multiflora	Rmu_sc0000233.1_g000007 Rmu_sc0006124.1_g000004 Rmu_sc0013146.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092690 Rroxscaffold_3G00250230
rosa_samantha	Rh1CG035800 Rh3CG122900 Rh3CG285100 Rh5BG382900 Rh7AG223400 Rh7AG241400 Rh7BG236100 Rh7CG145700 Rh7CG236700 Rh7DG230400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	24, 37, 527, 617
AcuI	CTGAAG	2 cut(s)	378, 513
AfaI	GTAC	3 cut(s)	450, 583, 720
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	12, 572, 598
AluBI	AGCT	2 cut(s)	410, 529
AluI	AGCT	2 cut(s)	410, 529
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	24, 37, 527, 617
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	65, 131
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	77, 118
BccI	CCATC	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	571
BfaI	CTAG	5 cut(s)	78, 105, 344, 452, 695
BfmI	CTRYAG	3 cut(s)	63, 124, 381
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	3 cut(s)	66, 74, 132
BlsI	GCNGC	3 cut(s)	67, 75, 133
BmiI	GGNNCC	3 cut(s)	17, 31, 400
BoxI	GACNNNNGTC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	131
Bsa29I	ATCGAT	2 cut(s)	154, 324
BsaJI	CCNNGG	2 cut(s)	42, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	58, 203
Bse3DI	GCAATG	3 cut(s)	68, 483, 504
BseCI	ATCGAT	2 cut(s)	154, 324
BseDI	CCNNGG	2 cut(s)	42, 413
BseGI	GGATG	5 cut(s)	194, 199, 228, 322, 675
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	3 cut(s)	68, 483, 504
BseNI	ACTGG	2 cut(s)	58, 203
BseXI	GCAGC	2 cut(s)	77, 118
BshFI	GGCC	1 cut(s)	342
BshVI	ATCGAT	2 cut(s)	154, 324
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	342
BspDI	ATCGAT	2 cut(s)	154, 324
BspLI	GGNNCC	3 cut(s)	17, 31, 400
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	4 cut(s)	24, 37, 527, 617
BsrDI	GCAATG	3 cut(s)	68, 483, 504
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	2 cut(s)	58, 203
BssECI	CCNNGG	2 cut(s)	42, 413
BssMI	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	2 cut(s)	425, 592
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	178
BstF5I	GGATG	5 cut(s)	194, 199, 228, 322, 675
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	6 cut(s)	32, 274, 324, 328, 535, 625
BstMBI	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSFI	CTRYAG	3 cut(s)	63, 124, 381
BstV1I	GCAGC	2 cut(s)	77, 118
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	2 cut(s)	154, 324
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	2 cut(s)	154, 324
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	5 cut(s)	194, 199, 228, 322, 675
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	131
ClaI	ATCGAT	2 cut(s)	154, 324
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	449, 582, 719
CviAII	CATG	3 cut(s)	183, 538, 616
CviJI	RGCY	8 cut(s)	16, 229, 342, 410, 508, 529, 620, 647
CviKI_1	RGCY	8 cut(s)	16, 229, 342, 410, 508, 529, 620, 647
CviQI	GTAC	3 cut(s)	449, 582, 719
DpnI	GATC	6 cut(s)	31, 273, 323, 327, 534, 624
DpnII	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
Eam1104I	CTCTTC	2 cut(s)	425, 592
EarI	CTCTTC	2 cut(s)	425, 592
Eco130I	CCWWGG	1 cut(s)	413
Eco47III	AGCGCT	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	378, 513
EcoT14I	CCWWGG	1 cut(s)	413
EcoT22I	ATGCAT	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	3 cut(s)	186, 541, 619
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FatI	CATG	3 cut(s)	182, 537, 615
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	66, 74, 132
FokI	GGATG	5 cut(s)	186, 201, 235, 329, 682
Fsp4HI	GCNGC	3 cut(s)	66, 74, 132
FspBI	CTAG	5 cut(s)	78, 105, 344, 452, 695
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	66, 74, 132
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	342
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	186, 541, 619
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	8, 151, 156, 196
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	4 cut(s)	46, 94, 609, 669
Hpy188III	TCNNGA	3 cut(s)	110, 160, 682
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	4 cut(s)	109, 389, 566, 629
HpyCH4V	TGCA	4 cut(s)	65, 180, 443, 476
Hsp92II	CATG	3 cut(s)	186, 541, 619
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
LmnI	GCTCC	2 cut(s)	21, 415
LpnPI	CCDG	5 cut(s)	39, 95, 145, 216, 393
Lsp1109I	GCAGC	2 cut(s)	77, 118
MaeI	CTAG	5 cut(s)	78, 105, 344, 452, 695
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	6 cut(s)	31, 273, 323, 327, 534, 624
MboI	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
MboII	GAAGA	5 cut(s)	59, 110, 436, 442, 579
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	567, 593, 712
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	16, 43, 52, 246, 384, 426, 550, 595, 670
Mph1103I	ATGCAT	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	279, 578
MslI	CAYNNNNRTG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
NlaIII	CATG	3 cut(s)	186, 541, 619
NlaIV	GGNNCC	3 cut(s)	17, 31, 400
NsiI	ATGCAT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	8, 151, 156
PkrI	GCNGC	3 cut(s)	67, 75, 133
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	17, 31, 400
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	3 cut(s)	450, 583, 720
RsaNI	GTAC	3 cut(s)	449, 582, 719
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	279, 578
SatI	GCNGC	3 cut(s)	66, 74, 132
Sau3AI	GATC	6 cut(s)	29, 271, 321, 325, 532, 622
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	123
SfcI	CTRYAG	3 cut(s)	63, 124, 381
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	567, 593, 712
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	5 cut(s)	78, 105, 344, 452, 695
StyI	CCWWGG	1 cut(s)	413
TaqI	TCGA	3 cut(s)	145, 154, 324
TasI	AATT	3 cut(s)	567, 593, 712
TatI	WGTACW	2 cut(s)	448, 718
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	8, 151, 156
Tru1I	TTAA	2 cut(s)	279, 578
Tru9I	TTAA	2 cut(s)	279, 578
TscAI	CASTG	1 cut(s)	733
TseI	GCWGC	2 cut(s)	65, 131
TspDTI	ATGAA	7 cut(s)	111, 164, 239, 380, 443, 644, 686
TspRI	CASTG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	5 cut(s)	78, 105, 344, 452, 695
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.