Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2726355 .. 2728334

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCACCGTCATCAAGTTGCCGGAGAAGCGACAATATCTCGGCCAGGCTCACATCCCGGAGCAACCACCGGAGAAGCGTCCGAAGCTTGGTGATCCACAACCGAGAGAGCTCGACGATACTGCAATGGAATTGCAAATACGTAGCAAATCAGAAGAAGCGAAGTCCGCAGGAGAAGTTAAGTCTGCGGGAGGCTTTTCAACTCATACCCGTCGAGACAATAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGATTGCCCTGACAAATCAAAGGGAATGGGAATGGGTTGTCGTCTTTGTTATGGCCCCTGTAAAAAGAATGAGCGTGAAGATGATGATGATGGTGAGCACCGCTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGTAGGCACTGGGGTGATGACTGCCCCTATTGGTCTAAAGCTAAAGTGGATAATTCCGAGATAAGTGATGATGATTATGTTGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.9

Weight (kDa)

5.53

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	372
AciI	CCGC	3 cut(s)	168, 188, 370
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	43, 247
AfiI	CCNNNNNNNGG	2 cut(s)	89, 268
AgsI	TTSAA	2 cut(s)	201, 380
AjnI	CCWGG	2 cut(s)	45, 266
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	88, 112, 455
AluI	AGCT	3 cut(s)	88, 112, 455
Alw21I	GWGCWC	3 cut(s)	8, 114, 369
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	43, 247, 322
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	104, 251, 374, 440
BalI	TGGCCA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	3 cut(s)	8, 114, 369
BccI	CCATC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	2 cut(s)	47, 268
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	210
BglII	AGATCT	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	47, 59, 268
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	47, 59, 268
BmrI	ACTGGG	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 268
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	47, 268
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	89, 268
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	428
BshFI	GGCC	3 cut(s)	45, 249, 324
BsiHKAI	GWGCWC	3 cut(s)	8, 114, 369
BsiSI	CCGG	3 cut(s)	23, 59, 71
BslI	CCNNNNNNNGG	2 cut(s)	89, 268
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	45, 249, 324
Bsp1286I	GDGCHC	3 cut(s)	8, 114, 369
Bsp143I	GATC	2 cut(s)	94, 237
BspACI	CCGC	3 cut(s)	168, 188, 370
BspANI	GGCC	3 cut(s)	45, 249, 324
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	94, 237
Bst2UI	CCWGG	2 cut(s)	47, 268
Bst4CI	ACNGT	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	97, 240
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	94, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 85, 167
BstNI	CCWGG	2 cut(s)	47, 268
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	45, 57, 266
BstSNI	TACGTA	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	45, 249, 324
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	68
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	8 cut(s)	45, 50, 88, 112, 195, 249, 324, 455
CviKI_1	RGCY	8 cut(s)	45, 50, 88, 112, 195, 249, 324, 455
DpnI	GATC	2 cut(s)	96, 239
DpnII	GATC	2 cut(s)	94, 237
EaeI	YGGCCR	2 cut(s)	43, 247
Ecl136II	GAGCTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	45, 266
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	254
FaiI	YATR	6 cut(s)	207, 246, 252, 321, 413, 492
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	45, 249, 324
HapII	CCGG	3 cut(s)	23, 59, 71
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	3 cut(s)	23, 59, 71
HphI	GGTGA	4 cut(s)	104, 251, 374, 440
Hpy188I	TCNGA	3 cut(s)	84, 154, 472
Hpy188III	TCNNGA	1 cut(s)	215
Hpy99I	CGWCG	2 cut(s)	119, 216
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	125, 136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 85, 167
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	94, 237
LmnI	GCTCC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	96, 239
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	2 cut(s)	94, 237
MboII	GAAGA	2 cut(s)	167, 359
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	8, 114, 369
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	131, 466
MluNI	TGGCCA	1 cut(s)	249
MnlI	CCTC	1 cut(s)	185
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	3 cut(s)	23, 59, 71
MspR9I	CCNGG	3 cut(s)	47, 59, 268
MvaI	CCWGG	2 cut(s)	47, 268
MwoI	GCNNNNNNNGC	3 cut(s)	28, 85, 167
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	94, 237
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	45, 266
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	45, 266
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	94, 237
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	47, 59, 268
SduI	GDGCHC	3 cut(s)	8, 114, 369
SetI	ASST	4 cut(s)	90, 114, 145, 457
SmiMI	CAYNNNNRTG	1 cut(s)	426
SnaBI	TACGTA	1 cut(s)	143
Sse9I	AATT	2 cut(s)	131, 466
SsiI	CCGC	3 cut(s)	168, 188, 370
SspI	AATATT	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	45, 57, 266
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	114, 214
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	131, 466
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspRI	CASTG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.