Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Forward (+)

24694 .. 25050

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggaattgcaaatacaaatacgtagcaaatcagaagaagcgaagtccgcagaagaagttaagtccacgggaggtcgagacattaatccttattgtgagatctgttatggccatgtcggtcaccaatcctgggaatgccctgacaaatcaaagggaatgggaatgggttgtcgtctttgttatggcccctgtaaaaagaaagatgatggtgatggtgagcaccgctctattgaaatggtcaaaaattgtatcgtttgtgggtctatggggaggcactggggtgatgactgcccctattggtctgaagctaaagtggataattccgagataagtgatgaagattatgttgggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

5.04

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AciI	CCGC	2 cut(s)	48, 223
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	1 cut(s)	330
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	109, 184
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	113, 221, 227, 293
BalI	TGGCCA	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	2 cut(s)	200, 206
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	355
BglII	AGATCT	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BsaAI	YACGTR	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	66, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	66, 129
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	111, 186
BsiHKAI	GWGCWC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	111, 186
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	48, 223
BspANI	GGCC	2 cut(s)	111, 186
BspLI	GGNNCC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	66, 129
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	128
BstSNI	TACGTA	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	111, 186
BtgI	CCRYGG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	3 cut(s)	111, 186, 308
CviKI_1	RGCY	3 cut(s)	111, 186, 308
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	116
FaiI	YATR	5 cut(s)	108, 114, 183, 266, 345
FatI	CATG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	111, 186
Hin1II	CATG	1 cut(s)	116
HphI	GGTGA	4 cut(s)	113, 221, 227, 293
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	34, 304, 325
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	115, 142, 153, 202, 262
MaeI	CTAG	1 cut(s)	355
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	101
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	47, 65, 350
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	3 cut(s)	5, 244, 319
MluNI	TGGCCA	1 cut(s)	111
MnlI	CCTC	2 cut(s)	65, 264
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	2 cut(s)	60, 84
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	279
PctI	GAATGC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	60, 84
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	25, 76, 310
SmiMI	CAYNNNNRTG	1 cut(s)	279
SnaBI	TACGTA	1 cut(s)	23
Sse9I	AATT	3 cut(s)	5, 244, 319
SsiI	CCGC	2 cut(s)	48, 223
SspMI	CTAG	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	128
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	76
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	5, 244, 319
Tru1I	TTAA	2 cut(s)	60, 84
Tru9I	TTAA	2 cut(s)	60, 84
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	84
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.