Rroxscaffold_1G00072470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006927
Physical Location & Seq
Forward (+)
93509539 .. 93510639
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072470.1

Sequence Viewer

Length: 489 bp
ATGAGCACCGTCGTCAGCCTGCCGGAGAAGCGACAAGATCTCGGCCAGGGTTGGACCCCGGAGCAGCCGCCGGAAAAGCGTTCGAAGCTTGATGATCCACATCCGGGAGAGGTCGACGATACTGCAATGGAATTGCAAAGTAATAGCAAATCAGAAGAAGCGAAGTCCACAGAAGAATTTAAGTCTACGGGAGGTCGAGACATTAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGAATGCCCTGACAAATCAAAGGGAATGGGAATGGGTTGTCGTCTTTGTTATGGCCCCTGTAAAAAGAAAGGTGATGGTGATGGTGATGGTGATGGTGAGCACTGGTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGGAGGCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGGATAATTCCGAGATAAGTGATGATGATTATGTTGCGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

4.65

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 114, 185
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 2 cut(s) 43, 229
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 104, 250
AgsI TTSAA 1 cut(s) 365
AjnI CCWGG 2 cut(s) 45, 248
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 2 cut(s) 88, 440
AluI AGCT 2 cut(s) 88, 440
Alw21I GWGCWC 2 cut(s) 8, 354
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 89
AoxI GGCC 3 cut(s) 43, 229, 304
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 176
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 54, 305
AsuC2I CCSGG 2 cut(s) 59, 105
AsuHPI GGTGA 7 cut(s) 233, 335, 341, 347, 353, 359, 425
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 8, 354
BbvI GCAGC 1 cut(s) 76
BccI CCATC 4 cut(s) 320, 326, 332, 338
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 2 cut(s) 47, 250
BcnI CCSGG 2 cut(s) 59, 105
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 487
BglII AGATCT 2 cut(s) 37, 219
BisI GCNGC 2 cut(s) 65, 68
BlsI GCNGC 2 cut(s) 66, 69
Bme1390I CCNGG 4 cut(s) 47, 59, 105, 250
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 305
BmiI GGNNCC 2 cut(s) 56, 307
BmrFI CCNGG 4 cut(s) 47, 59, 105, 250
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 59, 105
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 46, 57, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 250
Bse1I ACTGG 2 cut(s) 359, 413
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 2 cut(s) 47, 250
BseDI CCNNGG 3 cut(s) 46, 57, 249
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 104, 250
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 359, 413
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 3 cut(s) 45, 231, 306
BsiHKAI GWGCWC 2 cut(s) 8, 354
BsiSI CCGG 4 cut(s) 23, 59, 71, 104
BslI CCNNNNNNNGG 2 cut(s) 104, 250
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 3 cut(s) 45, 231, 306
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 8, 354
Bsp143I GATC 3 cut(s) 37, 94, 219
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 45, 231, 306
BspLI GGNNCC 2 cut(s) 56, 307
BspPI GGATC 1 cut(s) 89
BspT104I TTCGAA 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 359, 413
BssECI CCNNGG 3 cut(s) 46, 57, 249
BssMI GATC 3 cut(s) 37, 94, 219
Bst2UI CCWGG 2 cut(s) 47, 250
Bst4CI ACNGT 1 cut(s) 10
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 40, 97, 222
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 3 cut(s) 37, 94, 219
BstMWI GCNNNNNNNGC 3 cut(s) 28, 76, 85
BstNI CCWGG 2 cut(s) 47, 250
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 4 cut(s) 45, 57, 103, 248
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 2 cut(s) 37, 219
BstYI RGATCY 2 cut(s) 37, 219
BsuRI GGCC 3 cut(s) 45, 231, 306
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 352, 406
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 54, 305
CviAII CATG 1 cut(s) 233
CviJI RGCY 7 cut(s) 18, 45, 67, 88, 231, 306, 440
CviKI_1 RGCY 7 cut(s) 18, 45, 67, 88, 231, 306, 440
DpnI GATC 3 cut(s) 39, 96, 221
DpnII GATC 3 cut(s) 37, 94, 219
EaeI YGGCCR 2 cut(s) 43, 229
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 45, 248
FaeI CATG 1 cut(s) 236
FaiI YATR 5 cut(s) 228, 234, 303, 398, 477
FatI CATG 1 cut(s) 232
FblI GTMKAC 2 cut(s) 114, 185
Fnu4HI GCNGC 2 cut(s) 65, 68
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 65, 68
FspBI CTAG 1 cut(s) 487
GluI GCNGC 2 cut(s) 65, 68
HaeIII GGCC 3 cut(s) 45, 231, 306
HapII CCGG 4 cut(s) 23, 59, 71, 104
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 4 cut(s) 23, 59, 71, 104
HphI GGTGA 7 cut(s) 233, 335, 341, 347, 353, 359, 425
Hpy166II GTNNAC 3 cut(s) 115, 168, 186
Hpy188I TCNGA 3 cut(s) 154, 436, 457
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 3 cut(s) 115, 168, 186
Hpy99I CGWCG 2 cut(s) 14, 119
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 125, 136
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 76, 85
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 3 cut(s) 37, 94, 219
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 487
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 39, 96, 221
MboI GATC 3 cut(s) 37, 94, 219
MboII GAAGA 2 cut(s) 167, 185
MflI RGATCY 2 cut(s) 37, 219
MhlI GDGCHC 2 cut(s) 8, 354
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 3 cut(s) 131, 176, 451
MluNI TGGCCA 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 3 cut(s) 103, 185, 396
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 2 cut(s) 180, 204
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 4 cut(s) 23, 59, 71, 104
MspR9I CCNGG 4 cut(s) 47, 59, 105, 250
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 2 cut(s) 47, 250
MwoI GCNNNNNNNGC 3 cut(s) 28, 76, 85
NciI CCSGG 2 cut(s) 59, 105
NdeII GATC 3 cut(s) 37, 94, 219
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 56, 307
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 411
PctI GAATGC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 2 cut(s) 66, 69
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 45, 248
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 45, 248
PspN4I GGNNCC 2 cut(s) 56, 307
PspPI GGNCC 2 cut(s) 54, 305
PsuI RGATCY 2 cut(s) 37, 219
RseI CAYNNNNRTG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 180, 204
SatI GCNGC 2 cut(s) 65, 68
Sau3AI GATC 3 cut(s) 37, 94, 219
Sau96I GGNCC 2 cut(s) 54, 305
ScrFI CCNGG 4 cut(s) 47, 59, 105, 250
SduI GDGCHC 2 cut(s) 8, 354
SetI ASST 5 cut(s) 90, 114, 196, 325, 442
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 3 cut(s) 131, 176, 451
SsiI CCGC 1 cut(s) 68
SspI AATATT 1 cut(s) 377
SspMI CTAG 1 cut(s) 487
StyD4I CCNGG 4 cut(s) 45, 57, 103, 248
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 83, 114, 196
TaqII GACCGA 1 cut(s) 227
TasI AATT 3 cut(s) 131, 176, 451
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 180, 204
Tru9I TTAA 2 cut(s) 180, 204
TscAI CASTG 2 cut(s) 359, 413
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 239
TspRI CASTG 2 cut(s) 359, 413
VpaK11BI GGWCC 1 cut(s) 54
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 114, 185
XspI CTAG 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.