Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2553045 .. 2554120

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGCACCGTCGTCAGCTTGCCGGAGAAGCGACAAGATCTCGGTCAGGGTCGGACCCCGGAGCAACCGCCGGAGAAGCGTCCGAAGCTTGATGATCCACAACTGGGAGAGGTCGACGATACAGCAATGGAATTGCAAATCAGTAGCAAATCAGAAGTGAAGTCAGCAGAAGAAGCGAAGTCTGCTGGAGGCTCTCCAACTCATACCCAAGGAAAGTTTCTTCAGTATTGTGAGATCTGTGGTGGCCATGTCGGTCACAAATGCTGGGATTGCCCAGACAAATCAAAGGGAATGGGAATGGGTTGTCATGAATGTTGCGGCCCCTGTAAAAAGAATGTCGATGATGTTGATGATGGTGTTGAGCACTGGTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGGGTATGGGTAATCACTGGGGTGATGACTGCCCCTTTCGGTCAAGTGCTAAAGTGGACAATTCCAGGTTAAGTGAAGATGAGGATAGTTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

4.92

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	68, 318
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AleI	CACNNNNGTG	1 cut(s)	423
AluBI	AGCT	2 cut(s)	18, 88
AluI	AGCT	2 cut(s)	18, 88
Alw21I	GWGCWC	2 cut(s)	8, 366
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	244, 319
AspS9I	GGNCC	2 cut(s)	54, 320
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	8, 366
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	59
BglII	AGATCT	2 cut(s)	37, 234
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	59, 469
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	54, 320
BmiI	GGNNCC	2 cut(s)	56, 322
BmrFI	CCNGG	2 cut(s)	59, 469
BmrI	ACTGGG	2 cut(s)	113, 430
BmuI	ACTGGG	2 cut(s)	113, 430
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	57, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	108, 371, 425
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	57, 208
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	108, 371, 425
BseYI	CCCAGC	1 cut(s)	264
BshFI	GGCC	2 cut(s)	246, 321
BsiHKAI	GWGCWC	2 cut(s)	8, 366
BsiSI	CCGG	3 cut(s)	23, 59, 71
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	2 cut(s)	246, 321
Bsp1286I	GDGCHC	2 cut(s)	8, 366
Bsp143I	GATC	3 cut(s)	37, 94, 234
BspACI	CCGC	2 cut(s)	68, 318
BspANI	GGCC	2 cut(s)	246, 321
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	56, 322
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	108, 371, 425
BssECI	CCNNGG	2 cut(s)	57, 208
BssMI	GATC	3 cut(s)	37, 94, 234
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	40, 97, 237
BstMBI	GATC	3 cut(s)	37, 94, 234
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 173, 182, 270
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	57, 467
BstX2I	RGATCY	2 cut(s)	37, 234
BstYI	RGATCY	2 cut(s)	37, 234
BsuRI	GGCC	2 cut(s)	246, 321
BtsIMutI	CAGTG	2 cut(s)	364, 418
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	54, 320
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	248, 308
CviJI	RGCY	5 cut(s)	18, 88, 192, 246, 321
CviKI_1	RGCY	5 cut(s)	18, 88, 192, 246, 321
DpnI	GATC	3 cut(s)	39, 96, 236
DpnII	GATC	3 cut(s)	37, 94, 234
EaeI	YGGCCR	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	251, 311
FaiI	YATR	4 cut(s)	204, 249, 309, 410
FatI	CATG	2 cut(s)	247, 307
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	246, 321
HapII	CCGG	3 cut(s)	23, 59, 71
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	251, 311
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	3 cut(s)	23, 59, 71
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	115, 460
Hpy188I	TCNGA	3 cut(s)	54, 84, 154
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	115, 460
Hpy99I	CGWCG	2 cut(s)	14, 119
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 173, 182, 270
Hsp92II	CATG	2 cut(s)	251, 311
Kzo9I	GATC	3 cut(s)	37, 94, 234
LmnI	GCTCC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	3 cut(s)	39, 96, 236
MboI	GATC	3 cut(s)	37, 94, 234
MboII	GAAGA	3 cut(s)	182, 212, 491
MflI	RGATCY	2 cut(s)	37, 234
MhlI	GDGCHC	2 cut(s)	8, 366
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	2 cut(s)	131, 463
MluNI	TGGCCA	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	32, 221
MnlI	CCTC	3 cut(s)	103, 182, 478
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	3 cut(s)	23, 59, 71
MspR9I	CCNGG	2 cut(s)	59, 469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 173, 182, 270
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	37, 94, 234
NlaIII	CATG	2 cut(s)	251, 311
NlaIV	GGNNCC	2 cut(s)	56, 322
NmuCI	GTSAC	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	423
PagI	TCATGA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	56, 322
PspPI	GGNCC	2 cut(s)	54, 320
PsuI	RGATCY	2 cut(s)	37, 234
RseI	CAYNNNNRTG	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	37, 94, 234
Sau96I	GGNCC	2 cut(s)	54, 320
ScrFI	CCNGG	2 cut(s)	59, 469
SduI	GDGCHC	2 cut(s)	8, 366
SetI	ASST	4 cut(s)	20, 90, 114, 473
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	131, 463
SsiI	CCGC	2 cut(s)	68, 318
SspI	AATATT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	57, 467
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	114, 339
TaqII	GACCGA	3 cut(s)	32, 242, 432
TasI	AATT	2 cut(s)	131, 463
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	2 cut(s)	371, 425
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	2 cut(s)	371, 425
VpaK11BI	GGWCC	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.