Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2721928 .. 2723342

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGCACCGTCGTCAGCTTGCCGGAGAAGCGACAAGATCTCGGCCACGGTCGGACCCCGGAGCAACCGCCGGAGAAGCGTCCGAAGCTTGATGATCCACAACTGGGAGAGGTCGACGATACTGCAATGGAATTGCAAATCAGTAGCAAATCAGAAGTGAAGTCAGCAGAAGAAGCGAAGTCCGCAGAAGAAGCGAAGTCTGCTGGAGGCTCTCCAACTCATACCCAAGGAAAGTTTCTTCAGTATTGTGAGATCTGTGGTGGCCATGTCGGTCACAAATGCTGGGATTGCCCAGACAAATCAAAGGGAATGGGAATGGGTTGTCATGAATGTTGCGGCCCCTGTAAAAAGAATGTCGATGATGATGATGATGGTGTTGAGCACTGGTCTATTGAAATGGTCAAATATTGTTTCGTTTGTGGGGGTATGGGTAAACACTGGGGTGATGACTGCCCATTTCGGTCAAATGCTAAAGTGGACAATTCCAAGTTAAGTGAAGATGAGGATAGTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.89

Weight (kDa)

4.96

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	3 cut(s)	68, 183, 336
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	43, 262
AcuI	CTGAAG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	18, 88
AluI	AGCT	2 cut(s)	18, 88
Alw21I	GWGCWC	2 cut(s)	8, 384
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	43, 262, 337
AspS9I	GGNCC	2 cut(s)	54, 338
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	8, 384
BccI	CCATC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	1 cut(s)	59
BglII	AGATCT	2 cut(s)	37, 252
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	54, 338
BmiI	GGNNCC	2 cut(s)	56, 340
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	2 cut(s)	113, 448
BmuI	ACTGGG	2 cut(s)	113, 448
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	46, 57, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	108, 389, 443
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	46, 57, 226
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	108, 389, 443
BseYI	CCCAGC	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	45, 264, 339
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	8, 384
BsiSI	CCGG	3 cut(s)	23, 59, 71
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	3 cut(s)	45, 264, 339
Bsp1286I	GDGCHC	2 cut(s)	8, 384
Bsp143I	GATC	3 cut(s)	37, 94, 252
BspACI	CCGC	3 cut(s)	68, 183, 336
BspANI	GGCC	3 cut(s)	45, 264, 339
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	56, 340
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	108, 389, 443
BssECI	CCNNGG	3 cut(s)	46, 57, 226
BssMI	GATC	3 cut(s)	37, 94, 252
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	10, 50
BstC8I	GCNNGC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	46
BstKTI	GATC	3 cut(s)	40, 97, 255
BstMBI	GATC	3 cut(s)	37, 94, 252
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 76, 85, 173, 182, 191, 200, 288
BstSCI	CCNGG	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	37, 252
BstYI	RGATCY	2 cut(s)	37, 252
BsuRI	GGCC	3 cut(s)	45, 264, 339
BtgI	CCRYGG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	382, 436
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	54, 338
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	266, 326
CviJI	RGCY	6 cut(s)	18, 45, 88, 210, 264, 339
CviKI_1	RGCY	6 cut(s)	18, 45, 88, 210, 264, 339
DpnI	GATC	3 cut(s)	39, 96, 254
DpnII	GATC	3 cut(s)	37, 94, 252
EaeI	YGGCCR	2 cut(s)	43, 262
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	269, 329
FaiI	YATR	4 cut(s)	222, 267, 327, 428
FatI	CATG	2 cut(s)	265, 325
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	45, 264, 339
HapII	CCGG	3 cut(s)	23, 59, 71
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	269, 329
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	3 cut(s)	23, 59, 71
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	115, 434, 478
Hpy188I	TCNGA	3 cut(s)	54, 84, 154
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	3 cut(s)	115, 434, 478
Hpy99I	CGWCG	2 cut(s)	14, 119
HpyCH4III	ACNGT	2 cut(s)	10, 50
HpyCH4V	TGCA	2 cut(s)	125, 136
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 76, 85, 173, 182, 191, 200, 288
Hsp92II	CATG	2 cut(s)	269, 329
Kzo9I	GATC	3 cut(s)	37, 94, 252
LmnI	GCTCC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	39, 96, 254
MboI	GATC	3 cut(s)	37, 94, 252
MboII	GAAGA	4 cut(s)	182, 200, 230, 509
MflI	RGATCY	2 cut(s)	37, 252
MhlI	GDGCHC	2 cut(s)	8, 384
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	131, 481
MluNI	TGGCCA	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	32, 239
MnlI	CCTC	3 cut(s)	103, 200, 496
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	3 cut(s)	23, 59, 71
MspR9I	CCNGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	8 cut(s)	28, 76, 85, 173, 182, 191, 200, 288
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	37, 94, 252
NlaIII	CATG	2 cut(s)	269, 329
NlaIV	GGNNCC	2 cut(s)	56, 340
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	441
PagI	TCATGA	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	56, 340
PspPI	GGNCC	2 cut(s)	54, 338
PsuI	RGATCY	2 cut(s)	37, 252
RseI	CAYNNNNRTG	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	3 cut(s)	37, 94, 252
Sau96I	GGNCC	2 cut(s)	54, 338
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	8, 384
SetI	ASST	3 cut(s)	20, 90, 114
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	2 cut(s)	131, 481
SsiI	CCGC	3 cut(s)	68, 183, 336
SspI	AATATT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	10, 50
TaqI	TCGA	2 cut(s)	114, 357
TaqII	GACCGA	2 cut(s)	260, 450
TasI	AATT	2 cut(s)	131, 481
TauI	GCSGC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	389, 443
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	389, 443
VpaK11BI	GGWCC	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.