Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Forward (+)

93490026 .. 93496441

Gene Structure 6416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGCACCGTCGTCAACTTGCCGGAGAAGCGACAAGATCTTGACCACAGTCGGATCCCGGAGCAACTGCCGGAGAAGCGTCCGAAGCTTGATGATCCACAACCGGGAGAGGTCGACGAAACTGCACTGGAATTGCAAATCAGTAGCAAATCAGAAGAAGCGAAATCAGAAGAAGCGAAGTCCGCAGGAGAAGTTAAGTCTGCGGGCGGCTTTTCAACTCATACCCGTCGAGACAATAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGATTGCCCTGACAAATCAAAGGGAATGGGAATGGGTTGTCGTCTTTGTTATGGCCCCTGTAAAAAGAATGAGCATGAAGATGATGGTGATGGTGAGCACCGCCCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGTAGGCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGGATAATTCCGAGATAAGTGATGATGATTATGTTGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.3

Weight (kDa)

4.85

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	4 cut(s)	183, 203, 207, 385
AclWI	GGATC	3 cut(s)	49, 62, 89
AcoI	YGGCCR	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	104, 283
AgsI	TTSAA	2 cut(s)	216, 395
AjnI	CCWGG	1 cut(s)	281
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	88, 470
AluI	AGCT	2 cut(s)	88, 470
Alw21I	GWGCWC	2 cut(s)	8, 384
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	49, 62, 89
AoxI	GGCC	2 cut(s)	262, 337
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	2 cut(s)	59, 105
AsuHPI	GGTGA	4 cut(s)	266, 383, 389, 455
BalI	TGGCCA	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	8, 384
BccI	CCATC	2 cut(s)	362, 368
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	59, 105
BcoDI	GTCTC	1 cut(s)	225
BglII	AGATCT	2 cut(s)	37, 252
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	59, 105, 283
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	56, 340
BmrFI	CCNGG	3 cut(s)	59, 105, 283
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	59, 105
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 283
Bse1I	ACTGG	2 cut(s)	132, 443
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	104, 283
BseNI	ACTGG	2 cut(s)	132, 443
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	264, 339
BsiHKAI	GWGCWC	2 cut(s)	8, 384
BsiSI	CCGG	4 cut(s)	23, 59, 71, 104
BslI	CCNNNNNNNGG	2 cut(s)	104, 283
BsmAI	GTCTC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	264, 339
Bsp1286I	GDGCHC	2 cut(s)	8, 384
Bsp143I	GATC	4 cut(s)	37, 54, 94, 252
BspACI	CCGC	4 cut(s)	183, 203, 207, 385
BspANI	GGCC	2 cut(s)	264, 339
BspLI	GGNNCC	2 cut(s)	56, 340
BspPI	GGATC	3 cut(s)	49, 62, 89
BsrI	ACTGG	2 cut(s)	132, 443
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	37, 54, 94, 252
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	10, 50
BstC8I	GCNNGC	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	40, 57, 97, 255
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	4 cut(s)	37, 54, 94, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 76, 85, 182
BstNI	CCWGG	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	57, 103, 281
BstX2I	RGATCY	3 cut(s)	37, 54, 252
BstYI	RGATCY	3 cut(s)	37, 54, 252
BsuRI	GGCC	2 cut(s)	264, 339
BtsIMutI	CAGTG	2 cut(s)	125, 436
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	266, 359
CviJI	RGCY	5 cut(s)	88, 210, 264, 339, 470
CviKI_1	RGCY	5 cut(s)	88, 210, 264, 339, 470
DpnI	GATC	4 cut(s)	39, 56, 96, 254
DpnII	GATC	4 cut(s)	37, 54, 94, 252
EaeI	YGGCCR	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	269, 362
FaiI	YATR	7 cut(s)	222, 261, 267, 336, 360, 428, 507
FatI	CATG	2 cut(s)	265, 358
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	264, 339
HapII	CCGG	4 cut(s)	23, 59, 71, 104
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	269, 362
HincII	GTYRAC	2 cut(s)	16, 115
HindII	GTYRAC	2 cut(s)	16, 115
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	4 cut(s)	23, 59, 71, 104
HphI	GGTGA	4 cut(s)	266, 383, 389, 455
Hpy166II	GTNNAC	2 cut(s)	16, 115
Hpy188I	TCNGA	6 cut(s)	54, 84, 154, 169, 466, 487
Hpy188III	TCNNGA	2 cut(s)	41, 230
Hpy8I	GTNNAC	2 cut(s)	16, 115
Hpy99I	CGWCG	3 cut(s)	14, 119, 231
HpyCH4III	ACNGT	2 cut(s)	10, 50
HpyCH4V	TGCA	2 cut(s)	125, 136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 76, 85, 182
Hsp92II	CATG	2 cut(s)	269, 362
Kzo9I	GATC	4 cut(s)	37, 54, 94, 252
LmnI	GCTCC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	4 cut(s)	39, 56, 96, 254
MboI	GATC	4 cut(s)	37, 54, 94, 252
MboII	GAAGA	3 cut(s)	167, 182, 374
MflI	RGATCY	3 cut(s)	37, 54, 252
MhlI	GDGCHC	2 cut(s)	8, 384
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	131, 481
MluNI	TGGCCA	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	363, 441
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	4 cut(s)	23, 59, 71, 104
MspR9I	CCNGG	3 cut(s)	59, 105, 283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	28, 76, 85, 182
NciI	CCSGG	2 cut(s)	59, 105
NdeII	GATC	4 cut(s)	37, 54, 94, 252
NlaIII	CATG	2 cut(s)	269, 362
NlaIV	GGNNCC	2 cut(s)	56, 340
NmuCI	GTSAC	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	441
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	209
PshAI	GACNNNNGTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	56, 340
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	37, 54, 252
RseI	CAYNNNNRTG	2 cut(s)	363, 441
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	4 cut(s)	37, 54, 94, 252
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	59, 105, 283
SduI	GDGCHC	2 cut(s)	8, 384
SetI	ASST	3 cut(s)	90, 114, 472
SmiMI	CAYNNNNRTG	2 cut(s)	363, 441
Sse9I	AATT	2 cut(s)	131, 481
SsiI	CCGC	4 cut(s)	183, 203, 207, 385
SspI	AATATT	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	57, 103, 281
TaaI	ACNGT	2 cut(s)	10, 50
TaqI	TCGA	2 cut(s)	114, 229
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	131, 481
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	132, 443
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	132, 443
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.