Rh5CG032900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006927
Physical Location & Seq
Reverse (-)
2125580 .. 2126771
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG032900.1

Sequence Viewer

Length: 483 bp
ATGAGCACCGTCGTCAACTTGCCGGAGAAGCGACAAGATCTTGACCAGGGTCGGATCCCGGAGCAACTGCCGGAGAAGCGTCCGAAGCTTGATGATCCACAACCTGGAGAGGTCGACGAAACTGCAATGGAATTGCAAATACGTAGCAAATCAGAAGAAGCGAAGTCCGCAGAAGAAGTTGAGTCTACGGGAGGTCGAGACATTAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGAATGTCCTGACAAATCAAAGGGAATGGGAATGGGTTGTTGTCTTTGTTATGGCCCATGTAAAAAGAAAGATGATGGTGATGGTGATGGTGAGCACTGGTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGGAGGCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGGATAATTCCGAGATAAGTGATGATGATTATGTTGCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

4.52

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 2 cut(s) 114, 185
AciI CCGC 1 cut(s) 168
AclWI GGATC 3 cut(s) 49, 62, 89
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 104, 250
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 3 cut(s) 45, 103, 248
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 2 cut(s) 88, 434
AluI AGCT 2 cut(s) 88, 434
Alw21I GWGCWC 2 cut(s) 8, 348
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 3 cut(s) 49, 62, 89
AoxI GGCC 2 cut(s) 229, 304
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 5 cut(s) 233, 341, 347, 353, 419
BalI TGGCCA 1 cut(s) 231
BamHI GGATCC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 8, 348
BccI CCATC 3 cut(s) 320, 326, 332
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 3 cut(s) 47, 105, 250
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 481
BglII AGATCT 2 cut(s) 37, 219
Bme1390I CCNGG 4 cut(s) 47, 59, 105, 250
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 4 cut(s) 47, 59, 105, 250
BmrI ACTGGG 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 412
BoxI GACNNNNGTC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 46, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 250
Bse1I ACTGG 2 cut(s) 353, 407
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 3 cut(s) 47, 105, 250
BseDI CCNNGG 2 cut(s) 46, 249
BseLI CCNNNNNNNGG 2 cut(s) 104, 250
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 353, 407
BshFI GGCC 2 cut(s) 231, 306
BsiHKAI GWGCWC 2 cut(s) 8, 348
BsiSI CCGG 3 cut(s) 23, 59, 71
BslI CCNNNNNNNGG 2 cut(s) 104, 250
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 231, 306
Bsp1286I GDGCHC 2 cut(s) 8, 348
Bsp143I GATC 4 cut(s) 37, 54, 94, 219
BspACI CCGC 1 cut(s) 168
BspANI GGCC 2 cut(s) 231, 306
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 3 cut(s) 49, 62, 89
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 353, 407
BssECI CCNNGG 2 cut(s) 46, 249
BssMI GATC 4 cut(s) 37, 54, 94, 219
Bst2UI CCWGG 3 cut(s) 47, 105, 250
Bst4CI ACNGT 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 239
BstKTI GATC 4 cut(s) 40, 57, 97, 222
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 37, 54, 94, 219
BstMWI GCNNNNNNNGC 4 cut(s) 28, 76, 85, 167
BstNI CCWGG 3 cut(s) 47, 105, 250
BstPAI GACNNNNGTC 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 4 cut(s) 45, 57, 103, 248
BstSNI TACGTA 1 cut(s) 143
BstX2I RGATCY 3 cut(s) 37, 54, 219
BstYI RGATCY 3 cut(s) 37, 54, 219
BsuRI GGCC 2 cut(s) 231, 306
BtsIMutI CAGTG 2 cut(s) 346, 400
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 68
CviAII CATG 2 cut(s) 233, 309
CviJI RGCY 4 cut(s) 88, 231, 306, 434
CviKI_1 RGCY 4 cut(s) 88, 231, 306, 434
DpnI GATC 4 cut(s) 39, 56, 96, 221
DpnII GATC 4 cut(s) 37, 54, 94, 219
EaeI YGGCCR 1 cut(s) 229
Eco105I TACGTA 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 450
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 3 cut(s) 45, 103, 248
FaeI CATG 2 cut(s) 236, 312
FaiI YATR 6 cut(s) 228, 234, 303, 310, 392, 471
FatI CATG 2 cut(s) 232, 308
FblI GTMKAC 2 cut(s) 114, 185
FspBI CTAG 1 cut(s) 481
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 2 cut(s) 231, 306
HapII CCGG 3 cut(s) 23, 59, 71
HgaI GACGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 236, 312
HincII GTYRAC 2 cut(s) 16, 115
HindII GTYRAC 2 cut(s) 16, 115
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 23, 59, 71
HphI GGTGA 5 cut(s) 233, 341, 347, 353, 419
Hpy166II GTNNAC 3 cut(s) 16, 115, 186
Hpy188I TCNGA 5 cut(s) 54, 84, 154, 430, 451
Hpy188III TCNNGA 3 cut(s) 41, 197, 260
Hpy8I GTNNAC 3 cut(s) 16, 115, 186
Hpy99I CGWCG 2 cut(s) 14, 119
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 125, 136, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 76, 85, 167
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 236, 312
Kzo9I GATC 4 cut(s) 37, 54, 94, 219
LmnI GCTCC 1 cut(s) 61
MaeI CTAG 1 cut(s) 481
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 39, 56, 96, 221
MboI GATC 4 cut(s) 37, 54, 94, 219
MboII GAAGA 2 cut(s) 167, 185
MflI RGATCY 3 cut(s) 37, 54, 219
MhlI GDGCHC 2 cut(s) 8, 348
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 2 cut(s) 131, 445
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 3 cut(s) 103, 185, 390
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 3 cut(s) 23, 59, 71
MspR9I CCNGG 4 cut(s) 47, 59, 105, 250
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 3 cut(s) 47, 105, 250
MwoI GCNNNNNNNGC 4 cut(s) 28, 76, 85, 167
NciI CCSGG 1 cut(s) 59
NdeII GATC 4 cut(s) 37, 54, 94, 219
NlaIII CATG 2 cut(s) 236, 312
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 405
PctI GAATGC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 57
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 48
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 45, 103, 248
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 45, 103, 248
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 3 cut(s) 37, 54, 219
RseI CAYNNNNRTG 1 cut(s) 405
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 4 cut(s) 37, 54, 94, 219
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 47, 59, 105, 250
SduI GDGCHC 2 cut(s) 8, 348
SetI ASST 6 cut(s) 90, 106, 114, 145, 196, 436
SmiMI CAYNNNNRTG 1 cut(s) 405
SnaBI TACGTA 1 cut(s) 143
Sse9I AATT 2 cut(s) 131, 445
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 481
StyD4I CCNGG 4 cut(s) 45, 57, 103, 248
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 114, 196
TaqII GACCGA 1 cut(s) 227
TasI AATT 2 cut(s) 131, 445
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 353, 407
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspRI CASTG 2 cut(s) 353, 407
Van91I CCANNNNNTGG 1 cut(s) 104
VspI ATTAAT 1 cut(s) 204
XmiI GTMKAC 2 cut(s) 114, 185
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.