Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2138990 .. 2140069

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG033200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCACCGTCGTCAGCTTGCCGGAGAAGCGACAAGATCTCGGCCAGGGTCGGACCCCGGAGCAACCGCCGGAGAAGCGTCCGAAGCTTGATGATCCACAACTGGGAGAGGTCGACGATACTGCAATGGAATTGCAAATCAGTAGCAAATCAGAAGAAGTGAAGTCAGCAGAAGAAGCGAAGTCTGCTGGAGGCTCTCCAACTCATACCCAAGGAAAGTTTCTTCAGTATTGTGAGATCTGTGGTGGCCATGTCGGTCACAAATGCTGGGATTGCCCAGACAAATCAAAGGGAATGGGAATGGGTTGTCATGAATGTTGCGGCCCCTGTAAAAAGAATGTCGATGATGATAATGATGGTGTTGAGCACTGGTCTATTGAAATGGTCAAATACTGTATCATTTGTGGGGGTATGGGTAAACACTGGGGTGATGACTGCCCCTTTCGGTCAAATGCTAAAGTGGACAATTCCAAGTTAAGTGAAGATGAGGATAGTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.37

Weight (kDa)

4.94

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	68, 321
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	43, 247
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	2 cut(s)	18, 88
AluI	AGCT	2 cut(s)	18, 88
Alw21I	GWGCWC	2 cut(s)	8, 369
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	43, 247, 322
AspS9I	GGNCC	2 cut(s)	54, 323
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	8, 369
BccI	CCATC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	59
BglII	AGATCT	2 cut(s)	37, 237
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	47, 59
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	54, 323
BmiI	GGNNCC	2 cut(s)	56, 325
BmrFI	CCNGG	2 cut(s)	47, 59
BmrI	ACTGGG	2 cut(s)	113, 433
BmuI	ACTGGG	2 cut(s)	113, 433
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	46, 57, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	108, 374, 428
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	46, 57, 211
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	108, 374, 428
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	3 cut(s)	45, 249, 324
BsiHKAI	GWGCWC	2 cut(s)	8, 369
BsiSI	CCGG	3 cut(s)	23, 59, 71
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	3 cut(s)	45, 249, 324
Bsp1286I	GDGCHC	2 cut(s)	8, 369
Bsp143I	GATC	3 cut(s)	37, 94, 237
BspACI	CCGC	2 cut(s)	68, 321
BspANI	GGCC	3 cut(s)	45, 249, 324
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	56, 325
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	108, 374, 428
BssECI	CCNNGG	3 cut(s)	46, 57, 211
BssMI	GATC	3 cut(s)	37, 94, 237
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	10, 395
BstC8I	GCNNGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	40, 97, 240
BstMBI	GATC	3 cut(s)	37, 94, 237
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 176, 185, 273
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	45, 57
BstX2I	RGATCY	2 cut(s)	37, 237
BstYI	RGATCY	2 cut(s)	37, 237
BsuRI	GGCC	3 cut(s)	45, 249, 324
BtsIMutI	CAGTG	2 cut(s)	367, 421
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	54, 323
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	251, 311
CviJI	RGCY	6 cut(s)	18, 45, 88, 195, 249, 324
CviKI_1	RGCY	6 cut(s)	18, 45, 88, 195, 249, 324
DpnI	GATC	3 cut(s)	39, 96, 239
DpnII	GATC	3 cut(s)	37, 94, 237
EaeI	YGGCCR	2 cut(s)	43, 247
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	254, 314
FaiI	YATR	4 cut(s)	207, 252, 312, 413
FatI	CATG	2 cut(s)	250, 310
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	322
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	45, 249, 324
HapII	CCGG	3 cut(s)	23, 59, 71
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	254, 314
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	3 cut(s)	23, 59, 71
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	115, 419, 463
Hpy188I	TCNGA	3 cut(s)	54, 84, 154
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	3 cut(s)	115, 419, 463
Hpy99I	CGWCG	2 cut(s)	14, 119
HpyCH4III	ACNGT	2 cut(s)	10, 395
HpyCH4V	TGCA	2 cut(s)	125, 136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 176, 185, 273
Hsp92II	CATG	2 cut(s)	254, 314
Kzo9I	GATC	3 cut(s)	37, 94, 237
LmnI	GCTCC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	39, 96, 239
MboI	GATC	3 cut(s)	37, 94, 237
MboII	GAAGA	4 cut(s)	167, 185, 215, 494
MflI	RGATCY	2 cut(s)	37, 237
MhlI	GDGCHC	2 cut(s)	8, 369
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	131, 466
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	32, 224
MnlI	CCTC	3 cut(s)	103, 185, 481
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	3 cut(s)	23, 59, 71
MspR9I	CCNGG	2 cut(s)	47, 59
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	6 cut(s)	28, 76, 85, 176, 185, 273
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	37, 94, 237
NlaIII	CATG	2 cut(s)	254, 314
NlaIV	GGNNCC	2 cut(s)	56, 325
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	426
PagI	TCATGA	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	56, 325
PspPI	GGNCC	2 cut(s)	54, 323
PsuI	RGATCY	2 cut(s)	37, 237
RseI	CAYNNNNRTG	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	3 cut(s)	37, 94, 237
Sau96I	GGNCC	2 cut(s)	54, 323
ScrFI	CCNGG	2 cut(s)	47, 59
SduI	GDGCHC	2 cut(s)	8, 369
SetI	ASST	3 cut(s)	20, 90, 114
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	131, 466
SsiI	CCGC	2 cut(s)	68, 321
StyD4I	CCNGG	2 cut(s)	45, 57
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	10, 395
TaqI	TCGA	2 cut(s)	114, 342
TaqII	GACCGA	2 cut(s)	245, 435
TasI	AATT	2 cut(s)	131, 466
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	2 cut(s)	374, 428
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	374, 428
VpaK11BI	GGWCC	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.