Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

2563934 .. 2566326

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTGCTGGTGTGGTTTATGTCTCTTGAGCGGTCACCAGAAGAGCATTGCCTCGATCTGGATTGTCATGGTGTTCTGCTTGTCTGTTATATGGCCCACATAGTGGGTTCGTCACCGACGGGTGACGTCTGTCTCCCACCTCTGATAAGTTTGGGTCTCATTGAAATGGAATTGCAAATCAGTAGCAAATCAGTAGAAGCGAAGTCCGCAGAAGAAGTGAAGTCTGCAGAAGAAGCAAAGTCTGCTGGAGGCTCTCCAACTCATACCCAAGCAAAGTTTCTTGAGTATTGTGAGATCTGTGGTGGCCATGTCGGTCACGAATGCTGGGATTGCCCAGACAAATCAAAGGGAATAGGAATGGGTTGTCTTGAATGTTGCGGCCCCTGTAAAAAGAATGACGATGATGATGATGATGGTGAGCACTGCTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTGTGTGGGTAATCACTGGGGTGATGACTGCCCCTGTTGGTCTGAAGCTGAAGCGGATAATTCCAAGTTAAGTGAAGATGATGATGGTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.08

Weight (kDa)

4.36

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	4 cut(s)	31, 207, 378, 515
AcoI	YGGCCR	1 cut(s)	304
AcuI	CTGAAG	2 cut(s)	525, 531
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	58, 103
AgsI	TTSAA	3 cut(s)	164, 371, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	27, 137, 161
AoxI	GGCC	3 cut(s)	93, 304, 379
AspS9I	GGNCC	2 cut(s)	94, 380
AsuHPI	GGTGA	5 cut(s)	27, 105, 134, 428, 494
BalI	TGGCCA	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	2 cut(s)	407, 539
BcoDI	GTCTC	3 cut(s)	27, 137, 161
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	94, 380
BmiI	GGNNCC	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	487
BoxI	GACNNNNGTC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	47, 302
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 103
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	58, 103
BseMI	GCAATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	3 cut(s)	95, 306, 381
BsiHKAI	GWGCWC	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	58, 103
BsmAI	GTCTC	3 cut(s)	27, 137, 161
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	95, 306, 381
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	55, 294
BspACI	CCGC	4 cut(s)	31, 207, 378, 515
BspANI	GGCC	3 cut(s)	95, 306, 381
BspLI	GGNNCC	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	55, 294
BssNI	GRCGYC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	58, 297
BstMAI	GTCTC	3 cut(s)	27, 137, 161
BstMBI	GATC	2 cut(s)	55, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 233, 242, 330
BstPAI	GACNNNNGTC	1 cut(s)	129
BstPI	GGTNACC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	95, 306, 381
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	421, 475
Cfr13I	GGNCC	2 cut(s)	94, 380
CviAII	CATG	2 cut(s)	68, 308
CviJI	RGCY	5 cut(s)	95, 252, 306, 381, 509
CviKI_1	RGCY	5 cut(s)	95, 252, 306, 381, 509
DpnI	GATC	2 cut(s)	57, 296
DpnII	GATC	2 cut(s)	55, 294
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	525, 531
Eco91I	GGTNACC	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	33
FaeI	CATG	2 cut(s)	71, 311
FaiI	YATR	7 cut(s)	20, 69, 90, 92, 101, 264, 309
FatI	CATG	2 cut(s)	67, 307
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	95, 306, 381
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	71, 311
HphI	GGTGA	5 cut(s)	27, 105, 134, 428, 494
Hpy188I	TCNGA	2 cut(s)	144, 505
Hpy188III	TCNNGA	5 cut(s)	26, 59, 281, 317, 368
Hpy99I	CGWCG	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	175, 227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 233, 242, 330
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	71, 311
Kzo9I	GATC	2 cut(s)	55, 294
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	8 cut(s)	44, 51, 231, 310, 348, 397, 463, 508
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	4 cut(s)	33, 111, 122, 314
MalI	GATC	2 cut(s)	57, 296
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	2 cut(s)	55, 294
MboII	GAAGA	4 cut(s)	53, 224, 242, 548
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	2 cut(s)	170, 520
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	3 cut(s)	62, 150, 242
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	530
MslI	CAYNNNNRTG	2 cut(s)	164, 480
Msp20I	TGGCCA	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	206, 233, 242, 330
NdeII	GATC	2 cut(s)	55, 294
NlaIII	CATG	2 cut(s)	71, 311
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	4 cut(s)	33, 111, 122, 314
OliI	CACNNNNGTG	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	380
PshAI	GACNNNNGTC	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	94, 380
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	294
RseI	CAYNNNNRTG	2 cut(s)	164, 480
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	55, 294
Sau96I	GGNCC	2 cut(s)	94, 380
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	3 cut(s)	129, 142, 511
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	164, 480
SmlI	CTYRAG	2 cut(s)	26, 281
SmoI	CTYRAG	2 cut(s)	26, 281
Sse9I	AATT	2 cut(s)	170, 520
SsiI	CCGC	4 cut(s)	31, 207, 378, 515
SspI	AATATT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	170, 520
TauI	GCSGC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	428, 482
TseFI	GTSAC	4 cut(s)	33, 111, 122, 314
Tsp45I	GTSAC	4 cut(s)	33, 111, 122, 314
TspRI	CASTG	2 cut(s)	428, 482
Van91I	CCANNNNNTGG	1 cut(s)	103
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.