RLG00000031143
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006927
Physical Location & Seq
Reverse (-)
2541659 .. 2547036
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031143

Sequence Viewer

Length: 1017 bp
ATGTATCAGCACGCAAGCATCTCTCCCTCACATCGTCGCTGCTCCCCGTCACAGCTCCCCATCTCCGTCCGTCATCAGATACCGCAGCCCCGACGTCGATCTACCTATCCGTGTGTCCCTCGTCACATATCGATCTCCGACGCAAGCTCCCCGTCACCGGTCCTCGTCACCGCTCCCACAGATCGATCTCTCTCCGCATCGATCTACCCATCTCCTCTGTCCCTCATCACAGGTTCAGCTCTTGTTATGGCAAAAGAGTCGGCTGTTTGGAACGACGTTTTAGTAGACGTATTTTGTGACATATGTATCAAGGAGGTGGATAACAATAATCGTCCGCATACTCATTTTAATCCGATAAACAAGTATTATGCAAAGTTAAGGAAAAAAGGAATTGCACCCAAATTTGAAGACAAGTTGGATAAGATGTTCATAGGTATTTCAACCACTGGTAAGTATGCATATTCACCATCCTCTGCACTACCTTTCCCTGCAAGTCCACAGCAAGGTGACATTGAGGAGAACATTGAAGACGCAGGCGCCATGAGCACCGTCGTCAGCTTGCCGGAGAAGGGACAAGATCTCGGCCAGGGTCGGACCCCGGAGCAACCGCCGGAGAAGCGTCCAAAGCTTGATGATCCACAACTGGGAGAGGTCGACGATACTGCAATGGAATTGCAAAGTAATAGCAAATCAGAAGAAGCAAAGTCCGCAGAAGAAGTTAAGTCTATGGGAGGTCGAGACATTAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGAATGTCCTGACAAATCAAAGGGAATGGGAATGGGTTGTTGTCTTTGTTATGGCCCCTGTAAAAAGAAAGATGATGGTGATGGTGAGCACTGGTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGGAGGCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGGATAATTCCGAGATAAGTGATGATGATTATGTTGCGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

339

Amino Acids

37.35

Weight (kDa)

5.51

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 2 cut(s) 285, 654
AciI CCGC 6 cut(s) 83, 171, 195, 335, 608, 708
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 2 cut(s) 583, 769
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 984
AcyI GRCGYC 2 cut(s) 94, 537
AfiI CCNNNNNNNGG 5 cut(s) 157, 503, 569, 644, 790
AgeI ACCGGT 1 cut(s) 157
AgsI TTSAA 4 cut(s) 407, 441, 527, 893
AjnI CCWGG 2 cut(s) 585, 788
AleI CACNNNNGTG 1 cut(s) 939
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 6 cut(s) 55, 147, 239, 558, 628, 968
AluI AGCT 6 cut(s) 55, 147, 239, 558, 628, 968
Alw21I GWGCWC 2 cut(s) 548, 882
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 1 cut(s) 629
AoxI GGCC 3 cut(s) 583, 769, 844
ApeKI GCWGC 2 cut(s) 39, 85
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 1 cut(s) 744
AsiGI ACCGGT 1 cut(s) 157
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 3 cut(s) 160, 594, 845
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 8 cut(s) 147, 160, 456, 518, 773, 881, 887, 953
AvaII GGWCC 2 cut(s) 160, 594
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 414, 534
Bbv12I GWGCWC 2 cut(s) 548, 882
BbvI GCAGC 2 cut(s) 26, 97
BccI CCATC 5 cut(s) 68, 217, 475, 860, 866
BcgI CGANNNNNNTGC 4 cut(s) 240, 274, 644, 678
BciT130I CCWGG 2 cut(s) 587, 790
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 1 cut(s) 1015
BfoI RGCGCY 1 cut(s) 540
BglII AGATCT 2 cut(s) 577, 759
BisI GCNGC 2 cut(s) 40, 86
BlsI GCNGC 2 cut(s) 41, 87
Bme1390I CCNGG 3 cut(s) 587, 599, 790
Bme18I GGWCC 2 cut(s) 160, 594
BmgT120I GGNCC 3 cut(s) 160, 594, 845
BmiI GGNNCC 3 cut(s) 538, 596, 847
BmrFI CCNGG 3 cut(s) 587, 599, 790
BmrI ACTGGG 2 cut(s) 653, 946
BmsI GCATC 2 cut(s) 27, 206
BmuI ACTGGG 2 cut(s) 653, 946
BpiI GAAGAC 2 cut(s) 414, 534
BpuMI CCSGG 1 cut(s) 599
Bsa29I ATCGAT 3 cut(s) 131, 184, 200
BsaHI GRCGYC 2 cut(s) 94, 537
BsaJI CCNNGG 3 cut(s) 586, 597, 789
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 503, 569, 644, 790
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 4 cut(s) 451, 648, 887, 941
Bse3DI GCAATG 1 cut(s) 672
BseBI CCWGG 2 cut(s) 587, 790
BseCI ATCGAT 3 cut(s) 131, 184, 200
BseDI CCNNGG 3 cut(s) 586, 597, 789
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 5 cut(s) 157, 503, 569, 644, 790
BseMI GCAATG 1 cut(s) 672
BseNI ACTGG 4 cut(s) 451, 648, 887, 941
BseRI GAGGAG 2 cut(s) 204, 530
BseXI GCAGC 2 cut(s) 26, 97
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 585, 771, 846
BshNI GGYRCC 1 cut(s) 536
BshTI ACCGGT 1 cut(s) 157
BshVI ATCGAT 3 cut(s) 131, 184, 200
BsiHKAI GWGCWC 2 cut(s) 548, 882
BsiSI CCGG 4 cut(s) 158, 563, 599, 611
BslFI GGGAC 3 cut(s) 101, 205, 585
BslI CCNNNNNNNGG 5 cut(s) 157, 503, 569, 644, 790
BsmAI GTCTC 1 cut(s) 732
BsmFI GGGAC 3 cut(s) 101, 205, 585
BsnI GGCC 3 cut(s) 585, 771, 846
Bsp1286I GDGCHC 2 cut(s) 548, 882
Bsp143I GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
BspACI CCGC 6 cut(s) 83, 171, 195, 335, 608, 708
BspANI GGCC 3 cut(s) 585, 771, 846
BspDI ATCGAT 3 cut(s) 131, 184, 200
BspLI GGNNCC 3 cut(s) 538, 596, 847
BspPI GGATC 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 4 cut(s) 451, 648, 887, 941
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 586, 597, 789
BssMI GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
BssNI GRCGYC 2 cut(s) 94, 537
Bst2UI CCWGG 2 cut(s) 587, 790
Bst4CI ACNGT 1 cut(s) 550
BstACI GRCGYC 2 cut(s) 94, 537
BstC8I GCNNGC 5 cut(s) 12, 16, 145, 535, 560
BstEII GGTNACC 1 cut(s) 779
BstF5I GGATG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 8 cut(s) 101, 135, 184, 188, 204, 580, 637, 762
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
BstMWI GCNNNNNNNGC 4 cut(s) 543, 616, 625, 707
BstNI CCWGG 2 cut(s) 587, 790
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 3 cut(s) 585, 597, 788
BstV1I GCAGC 2 cut(s) 26, 97
BstV2I GAAGAC 2 cut(s) 414, 534
BstX2I RGATCY 2 cut(s) 577, 759
BstYI RGATCY 2 cut(s) 577, 759
Bsu15I ATCGAT 3 cut(s) 131, 184, 200
BsuRI GGCC 3 cut(s) 585, 771, 846
BsuTUI ATCGAT 3 cut(s) 131, 184, 200
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 444, 880, 934
Cac8I GCNNGC 5 cut(s) 12, 16, 145, 535, 560
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 160, 594, 845
ClaI ATCGAT 3 cut(s) 131, 184, 200
CseI GACGC 3 cut(s) 149, 539, 608
CspAI ACCGGT 1 cut(s) 157
CviAII CATG 2 cut(s) 541, 773
DinI GGCGCC 1 cut(s) 538
DpnI GATC 8 cut(s) 100, 134, 183, 187, 203, 579, 636, 761
DpnII GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
EaeI YGGCCR 2 cut(s) 583, 769
Eco47I GGWCC 2 cut(s) 160, 594
Eco57I CTGAAG 1 cut(s) 984
Eco91I GGTNACC 1 cut(s) 779
EcoO65I GGTNACC 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 585, 788
EcoT22I ATGCAT 1 cut(s) 460
EgeI GGCGCC 1 cut(s) 538
EheI GGCGCC 1 cut(s) 538
FaeI CATG 2 cut(s) 544, 776
FaqI GGGAC 3 cut(s) 101, 205, 585
FatI CATG 2 cut(s) 540, 772
FauNDI CATATG 1 cut(s) 302
FblI GTMKAC 2 cut(s) 285, 654
Fnu4HI GCNGC 2 cut(s) 40, 86
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 2 cut(s) 40, 86
FspBI CTAG 1 cut(s) 1015
GlaI GCGC 1 cut(s) 538
GluI GCNGC 2 cut(s) 40, 86
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 585, 771, 846
HapII CCGG 4 cut(s) 158, 563, 599, 611
HgaI GACGC 3 cut(s) 149, 539, 608
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 2 cut(s) 94, 537
Hin1II CATG 2 cut(s) 544, 776
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 1 cut(s) 257
HpaII CCGG 4 cut(s) 158, 563, 599, 611
HphI GGTGA 8 cut(s) 147, 160, 456, 518, 773, 881, 887, 953
Hpy166II GTNNAC 3 cut(s) 286, 497, 655
Hpy188I TCNGA 7 cut(s) 78, 139, 354, 594, 694, 964, 985
Hpy188III TCNNGA 2 cut(s) 737, 800
Hpy8I GTNNAC 3 cut(s) 286, 497, 655
Hpy99I CGWCG 7 cut(s) 39, 96, 99, 143, 278, 554, 659
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 3 cut(s) 94, 276, 288
HpyCH4V TGCA 7 cut(s) 371, 395, 458, 476, 491, 665, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 543, 616, 625, 707
HpySE526I ACGT 3 cut(s) 94, 276, 288
Hsp92I GRCGYC 2 cut(s) 94, 537
Hsp92II CATG 2 cut(s) 544, 776
HspAI GCGC 1 cut(s) 537
KasI GGCGCC 1 cut(s) 536
Kzo9I GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
LmnI GCTCC 5 cut(s) 47, 60, 152, 178, 601
Lsp1109I GCAGC 2 cut(s) 26, 97
LweI GCATC 2 cut(s) 27, 206
MaeI CTAG 1 cut(s) 1015
MaeII ACGT 3 cut(s) 94, 276, 288
MaeIII GTNAC 7 cut(s) 48, 122, 153, 166, 296, 506, 779
MalI GATC 8 cut(s) 100, 134, 183, 187, 203, 579, 636, 761
MbiI CCGCTC 1 cut(s) 173
MboI GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
MboII GAAGA 4 cut(s) 419, 539, 707, 725
MflI RGATCY 2 cut(s) 577, 759
MhlI GDGCHC 2 cut(s) 548, 882
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 4 cut(s) 390, 401, 671, 979
MluNI TGGCCA 1 cut(s) 771
Mly113I GGCGCC 1 cut(s) 537
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 3 cut(s) 162, 396, 572
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 460
MscI TGGCCA 1 cut(s) 771
MseI TTAA 4 cut(s) 348, 377, 720, 744
MslI CAYNNNNRTG 1 cut(s) 939
Msp20I TGGCCA 1 cut(s) 771
MspI CCGG 4 cut(s) 158, 563, 599, 611
MspR9I CCNGG 3 cut(s) 587, 599, 790
MvaI CCWGG 2 cut(s) 587, 790
MwoI GCNNNNNNNGC 4 cut(s) 543, 616, 625, 707
NarI GGCGCC 1 cut(s) 537
NciI CCSGG 1 cut(s) 599
NdeI CATATG 1 cut(s) 302
NdeII GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
NlaIII CATG 2 cut(s) 544, 776
NlaIV GGNNCC 3 cut(s) 538, 596, 847
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 7 cut(s) 48, 122, 153, 166, 296, 506, 779
NsiI ATGCAT 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 939
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 2 cut(s) 41, 87
PleI GAGTC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 585, 788
PspEI GGTNACC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 585, 788
PspN4I GGNNCC 3 cut(s) 538, 596, 847
PspPI GGNCC 3 cut(s) 160, 594, 845
PsuI RGATCY 2 cut(s) 577, 759
RseI CAYNNNNRTG 1 cut(s) 939
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 4 cut(s) 348, 377, 720, 744
SatI GCNGC 2 cut(s) 40, 86
Sau3AI GATC 8 cut(s) 98, 132, 181, 185, 201, 577, 634, 759
Sau96I GGNCC 3 cut(s) 160, 594, 845
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 587, 599, 790
SduI GDGCHC 2 cut(s) 548, 882
SfaNI GCATC 2 cut(s) 27, 206
SfoI GGCGCC 1 cut(s) 538
SinI GGWCC 2 cut(s) 160, 594
SmiMI CAYNNNNRTG 1 cut(s) 939
Sse9I AATT 4 cut(s) 390, 401, 671, 979
SsiI CCGC 6 cut(s) 83, 171, 195, 335, 608, 708
SspDI GGCGCC 1 cut(s) 536
SspI AATATT 1 cut(s) 905
SspMI CTAG 1 cut(s) 1015
StyD4I CCNGG 3 cut(s) 585, 597, 788
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 3 cut(s) 97, 279, 291
TaqI TCGA 6 cut(s) 97, 131, 184, 200, 654, 736
TaqII GACCGA 1 cut(s) 767
TasI AATT 4 cut(s) 390, 401, 671, 979
Tru1I TTAA 4 cut(s) 348, 377, 720, 744
Tru9I TTAA 4 cut(s) 348, 377, 720, 744
TscAI CASTG 3 cut(s) 451, 887, 941
TseFI GTSAC 7 cut(s) 48, 122, 153, 166, 296, 506, 779
TseI GCWGC 2 cut(s) 39, 85
Tsp45I GTSAC 7 cut(s) 48, 122, 153, 166, 296, 506, 779
TspDTI ATGAA 1 cut(s) 418
TspGWI ACGGA 3 cut(s) 55, 59, 99
TspRI CASTG 3 cut(s) 451, 887, 941
VpaK11BI GGWCC 2 cut(s) 160, 594
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 285, 654
XspI CTAG 1 cut(s) 1015
ZraI GACGTC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.