RLG00000031144

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006927
Physical Location & Seq
Reverse (-)
2549856 .. 2550995
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031144

Sequence Viewer

Length: 513 bp
ATGAGCACCGTCGTCAACTTGCCGGAGAAGCGACAAGATCTCGGCCAGGCTCAGACCCTGGAGCAACCGCCCGAGAACCGCCCGAAACTTGACGATCCTCGACGATACTGGTATGCTTTTGATTTACGTTCTAGGCAGTTGAATGACAAAAACATAGACGCAATGGAATTGCAAAGCAATAGCAAATCAGAAGAAGCGAAGTCTGCTGGAGGCTCTTCAACTCATACCCGTCGAGAGATTAATCCTTATTGTGAGATTTGTGGTGGCCATGTCGGTCACCAATCCTGGGATTGCCCTGACAGATCAAAGGGAATGGGAATGGGTTGTCGTCTTTGTTATGGCCCCTGTAAAAGGAAAGATGATGGTGATGGTGAGCACCGCTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGATCTATGGGTAATCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGAATAATTCCGAGATAAGTGATGATGATTATGTTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.32

Weight (kDa)

5.37

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 381
AciI CCGC 3 cut(s) 68, 79, 379
AclWI GGATC 2 cut(s) 89, 424
AcoI YGGCCR 2 cut(s) 43, 265
AcuI CTGAAG 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 286, 351
AgsI TTSAA 3 cut(s) 142, 219, 389
AjnI CCWGG 3 cut(s) 45, 57, 284
AleI CACNNNNGTG 1 cut(s) 435
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Alw21I GWGCWC 2 cut(s) 8, 378
AlwI GGATC 2 cut(s) 89, 424
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 43, 265, 340
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 4 cut(s) 269, 377, 383, 449
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 8, 378
BccI CCATC 2 cut(s) 356, 362
BciT130I CCWGG 3 cut(s) 47, 59, 286
BfaI CTAG 1 cut(s) 132
BglII AGATCT 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 47, 59, 286
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 3 cut(s) 47, 59, 286
BmrI ACTGGG 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 2 cut(s) 80, 228
BsaJI CCNNGG 2 cut(s) 57, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 351
Bse1I ACTGG 2 cut(s) 113, 437
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 3 cut(s) 47, 59, 286
BseDI CCNNGG 2 cut(s) 57, 285
BseLI CCNNNNNNNGG 2 cut(s) 286, 351
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 113, 437
BshFI GGCC 3 cut(s) 45, 267, 342
BsiHKAI GWGCWC 2 cut(s) 8, 378
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 286, 351
BsnI GGCC 3 cut(s) 45, 267, 342
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 8, 378
Bsp143I GATC 4 cut(s) 37, 94, 302, 416
BspACI CCGC 3 cut(s) 68, 79, 379
BspANI GGCC 3 cut(s) 45, 267, 342
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 89, 424
BspQI GCTCTTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 2 cut(s) 113, 437
BssECI CCNNGG 2 cut(s) 57, 285
BssMI GATC 4 cut(s) 37, 94, 302, 416
Bst2UI CCWGG 3 cut(s) 47, 59, 286
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 275
BstENI CCTNNNNNAGG 1 cut(s) 349
BstKTI GATC 4 cut(s) 40, 97, 305, 419
BstMBI GATC 4 cut(s) 37, 94, 302, 416
BstMWI GCNNNNNNNGC 2 cut(s) 28, 203
BstNI CCWGG 3 cut(s) 47, 59, 286
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 45, 57, 284
BstX2I RGATCY 2 cut(s) 37, 416
BstYI RGATCY 2 cut(s) 37, 416
BsuRI GGCC 3 cut(s) 45, 267, 342
BtsIMutI CAGTG 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 45, 50, 213, 267, 342, 464
CviKI_1 RGCY 6 cut(s) 45, 50, 213, 267, 342, 464
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 39, 96, 304, 418
DpnII GATC 4 cut(s) 37, 94, 302, 416
EaeI YGGCCR 2 cut(s) 43, 265
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 45, 57, 284
FaeI CATG 1 cut(s) 272
FaiI YATR 7 cut(s) 114, 155, 225, 270, 339, 422, 501
FatI CATG 1 cut(s) 268
FspBI CTAG 1 cut(s) 132
GsuI CTGGAG 2 cut(s) 80, 228
HaeIII GGCC 3 cut(s) 45, 267, 342
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 272
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HpaII CCGG 1 cut(s) 23
HphI GGTGA 4 cut(s) 269, 377, 383, 449
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 54, 190, 460, 481
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 3 cut(s) 14, 105, 234
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 203
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 4 cut(s) 37, 94, 302, 416
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 61
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 275
MalI GATC 4 cut(s) 39, 96, 304, 418
MbiI CCGCTC 1 cut(s) 381
MboI GATC 4 cut(s) 37, 94, 302, 416
MboII GAAGA 2 cut(s) 203, 207
MflI RGATCY 2 cut(s) 37, 416
MhlI GDGCHC 2 cut(s) 8, 378
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 2 cut(s) 167, 475
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 2 cut(s) 108, 203
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 3 cut(s) 47, 59, 286
MvaI CCWGG 3 cut(s) 47, 59, 286
MwoI GCNNNNNNNGC 2 cut(s) 28, 203
NdeII GATC 4 cut(s) 37, 94, 302, 416
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 220
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 45, 57, 284
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 3 cut(s) 45, 57, 284
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 2 cut(s) 37, 416
RseI CAYNNNNRTG 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 4 cut(s) 37, 94, 302, 416
Sau96I GGNCC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 47, 59, 286
SduI GDGCHC 2 cut(s) 8, 378
SetI ASST 2 cut(s) 130, 466
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 2 cut(s) 167, 475
SsiI CCGC 3 cut(s) 68, 79, 379
SspI AATATT 1 cut(s) 401
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 45, 57, 284
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 100, 232
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 167, 475
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspRI CASTG 1 cut(s) 437
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 349
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.