Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Reverse (-)

34432703 .. 34433173

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGCACCGTCGTCAGCTTGCCGGAGAAGCGACAAGATCTCGGGCAGGGTCGGACCCAGGAGCAACCGCCGGAGAAGCATCCGAAGCTTGATGATCCACAACTGGGAGAGGTCGACGATACTTCCGCAGAAGAAGTTAATTCTACGGGAGGTCGAGACATTAATCCTTATTGTGAGATCTGTTATGGCCATGTCGGTCACCAATCCTGGGAATGTCCTGACAAATCAAAGGGAATGGGAATGGGTTGTTGTCTTTGTTATGGCCCCTGTAAAAAGAAAGACGATGGTGAGCACTGGTCTATTGAAATGGTCAAATATTGTATCGTTTGTGGGTCTATGGGGAGGCACTGGGGTGATGACTGCCCCTATTGGTCTGAAGCTAAAGTGGATAATTCCGAGACAAGTGATAATGATTATGTTGCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

4.67

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	68, 126
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	104, 208
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	57, 206
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	18, 88, 380
AluI	AGCT	3 cut(s)	18, 88, 380
Alw21I	GWGCWC	2 cut(s)	8, 294
Alw26I	GTCTC	2 cut(s)	150, 392
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	187, 262
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	54, 263
AsuHPI	GGTGA	3 cut(s)	191, 299, 365
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	8, 294
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	59, 208
BcoDI	GTCTC	2 cut(s)	150, 392
BfaI	CTAG	1 cut(s)	427
BglII	AGATCT	2 cut(s)	37, 177
Bme1390I	CCNGG	2 cut(s)	59, 208
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	54, 263
BmiI	GGNNCC	2 cut(s)	56, 265
BmrFI	CCNGG	2 cut(s)	59, 208
BmrI	ACTGGG	2 cut(s)	113, 358
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	2 cut(s)	113, 358
BsaJI	CCNNGG	2 cut(s)	57, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 208
Bse1I	ACTGG	3 cut(s)	108, 299, 353
BseBI	CCWGG	2 cut(s)	59, 208
BseDI	CCNNGG	2 cut(s)	57, 207
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	104, 208
BseNI	ACTGG	3 cut(s)	108, 299, 353
BshFI	GGCC	2 cut(s)	189, 264
BsiHKAI	GWGCWC	2 cut(s)	8, 294
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	23, 71
BslI	CCNNNNNNNGG	2 cut(s)	104, 208
BsmAI	GTCTC	2 cut(s)	150, 392
BsnI	GGCC	2 cut(s)	189, 264
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	8, 294
Bsp143I	GATC	3 cut(s)	37, 94, 177
BspACI	CCGC	2 cut(s)	68, 126
BspANI	GGCC	2 cut(s)	189, 264
BspLI	GGNNCC	2 cut(s)	56, 265
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	108, 299, 353
BssECI	CCNNGG	2 cut(s)	57, 207
BssMI	GATC	3 cut(s)	37, 94, 177
Bst2UI	CCWGG	2 cut(s)	59, 208
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	3 cut(s)	40, 97, 180
BstMAI	GTCTC	2 cut(s)	150, 392
BstMBI	GATC	3 cut(s)	37, 94, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 76, 85
BstNI	CCWGG	2 cut(s)	59, 208
BstPI	GGTNACC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	57, 206
BstX2I	RGATCY	2 cut(s)	37, 177
BstYI	RGATCY	2 cut(s)	37, 177
BsuRI	GGCC	2 cut(s)	189, 264
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	292, 346
Cac8I	GCNNGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	54, 263
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	5 cut(s)	18, 88, 189, 264, 380
CviKI_1	RGCY	5 cut(s)	18, 88, 189, 264, 380
DpnI	GATC	3 cut(s)	39, 96, 179
DpnII	GATC	3 cut(s)	37, 94, 177
EaeI	YGGCCR	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	57, 206
FaeI	CATG	1 cut(s)	194
FaiI	YATR	5 cut(s)	186, 192, 261, 338, 417
FatI	CATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	1 cut(s)	66
FspBI	CTAG	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	189, 264
HapII	CCGG	2 cut(s)	23, 71
Hin1II	CATG	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	2 cut(s)	23, 71
HphI	GGTGA	3 cut(s)	191, 299, 365
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	54, 84, 376, 397
Hpy188III	TCNNGA	2 cut(s)	155, 218
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	14, 119
HpyCH4III	ACNGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 76, 85
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	37, 94, 177
LmnI	GCTCC	1 cut(s)	61
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	39, 96, 179
MboI	GATC	3 cut(s)	37, 94, 177
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	2 cut(s)	37, 177
MhlI	GDGCHC	2 cut(s)	8, 294
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	139, 391
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	103, 143, 336
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	138, 162
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	189
MspI	CCGG	2 cut(s)	23, 71
MspR9I	CCNGG	2 cut(s)	59, 208
MvaI	CCWGG	2 cut(s)	59, 208
MwoI	GCNNNNNNNGC	3 cut(s)	28, 76, 85
NdeII	GATC	3 cut(s)	37, 94, 177
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	56, 265
NmuCI	GTSAC	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	57, 206
PspEI	GGTNACC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	57, 206
PspN4I	GGNNCC	2 cut(s)	56, 265
PspPI	GGNCC	2 cut(s)	54, 263
PsuI	RGATCY	2 cut(s)	37, 177
RseI	CAYNNNNRTG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	138, 162
Sau3AI	GATC	3 cut(s)	37, 94, 177
Sau96I	GGNCC	2 cut(s)	54, 263
ScrFI	CCNGG	2 cut(s)	59, 208
SduI	GDGCHC	2 cut(s)	8, 294
SetI	ASST	5 cut(s)	20, 90, 114, 154, 382
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	139, 391
SsiI	CCGC	2 cut(s)	68, 126
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	57, 206
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	114, 154
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	139, 391
Tru1I	TTAA	2 cut(s)	138, 162
Tru9I	TTAA	2 cut(s)	138, 162
TscAI	CASTG	2 cut(s)	299, 353
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	299, 353
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.