Rw5G012550
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007324
Physical Location & Seq
Forward (+)
14777299 .. 14778854
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012550.1

Sequence Viewer

Length: 1101 bp
ATGGCTGAAATTCAAGGAGGGAACAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATTGAGGCAAAGAAGATGGATGAGGAGAGAAGAATAATGAAGAGAAGTGGTAGTGGTAGTGGGGATCATGGGGCTGATCAGACCCCCAGATCAATAAGCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAAGAGAAGTGTAGGGGTGGGAGAGAATAAGGAGTTGGCATCTTACTGGAAGCTTGAGAAGAGTGAGAGGAAGGAGAGGAACTTGCCCACAAATATGGTGCCTCAGATTTATGAGTCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTGGTCGGTGGTGGTGGTGCTTCTGTTTCTGGGTCCATTAGTCCCAACCCCAACATTGGATATGCGGTGGAGAGACCCATAATTAGTGGCATCCATCAGTCTACAGTGCTCTCTCCTCCTCCTGTGCTGCAACAGCACCTGATCCAACCACAACCAATTTCAGCAATGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCTCTTCCATATTCTCAACCTATTCCCCCAGTAGGCTCAGATTCTGATACAAGTGAGCATTCAGACTCAACAGCCAAAAGGAGGAGGAGAGGAGGAGGAACAAGTGGTGGAGGTGGAGATCAGCAGCAGGGGATCAGTACCAGTGGGACTGTGAGCGCAAGCACCTCAAGTGAATTGGGCACTGCTATTTCCAGAGGAGCTTCCATAATTGCAGAAGCTCTTCAGGGCTGTGAGGAGAGTGAAGAGAGGAGGCACAGAGAGATTTTGAGTTTGCATGAGAGGAGGATTCAGATTGAAGAGTCTAAAACTGAGATCAACAGGCAAGGAATCAATGGCCTTGTTGATGCCATTAACAAACTTGCTAATTCCATCCATGCCTTGGCTTCCAACAGCAACCAATCTTCAGCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

366

Amino Acids

40.1

Weight (kDa)

8.76

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 111 3.6e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 578
AciI CCGC 1 cut(s) 542
AclWI GGATC 3 cut(s) 162, 613, 824
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 890, 1071
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
AgsI TTSAA 2 cut(s) 14, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 7 cut(s) 197, 202, 373, 671, 884, 902, 1091
AluI AGCT 7 cut(s) 197, 202, 373, 671, 884, 902, 1091
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 71, 544
AlwI GGATC 3 cut(s) 162, 613, 824
AlwNI CAGNNNCTG 2 cut(s) 616, 728
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 3 cut(s) 604, 668, 808
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 510
AvaII GGWCC 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 866
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 591, 680, 820
BccI CCATC 5 cut(s) 100, 201, 460, 579, 1061
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 71, 544
BfmI CTRYAG 2 cut(s) 49, 579
BisI GCNGC 3 cut(s) 605, 669, 809
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 3 cut(s) 606, 670, 810
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 420, 511
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 4 cut(s) 368, 576, 655, 1018
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 3 cut(s) 268, 395, 835
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
Bse1I ACTGG 5 cut(s) 68, 262, 371, 713, 825
Bse3DI GCAATG 2 cut(s) 274, 648
BseDI CCNNGG 1 cut(s) 1062
BseGI GGATG 3 cut(s) 115, 567, 1053
BseLI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
BseMI GCAATG 2 cut(s) 274, 648
BseMII CTCAG 5 cut(s) 189, 194, 437, 735, 984
BseNI ACTGG 5 cut(s) 68, 262, 371, 713, 825
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 3 cut(s) 591, 680, 820
BshFI GGCC 1 cut(s) 1020
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 5 cut(s) 59, 293, 308, 504, 844
BslI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
BsmAI GTCTC 2 cut(s) 71, 544
BsmFI GGGAC 5 cut(s) 59, 293, 308, 504, 844
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 588, 866
Bsp143I GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 5 cut(s) 190, 195, 436, 734, 985
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 420, 511
BspPI GGATC 3 cut(s) 162, 613, 824
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 274, 648
BsrI ACTGG 5 cut(s) 68, 262, 371, 713, 825
BssECI CCNNGG 1 cut(s) 1062
BssMI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
BssT1I CCWWGG 1 cut(s) 1062
Bst4CI ACNGT 4 cut(s) 26, 70, 583, 835
Bst6I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 5 cut(s) 198, 203, 423, 721, 993
BstF5I GGATG 3 cut(s) 115, 567, 1053
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 7 cut(s) 157, 169, 182, 621, 805, 819, 999
BstMAI GTCTC 2 cut(s) 71, 544
BstMBI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
BstMWI GCNNNNNNNGC 3 cut(s) 252, 610, 665
BstSFI CTRYAG 2 cut(s) 49, 579
BstSLI GKGCMC 1 cut(s) 866
BstV1I GCAGC 3 cut(s) 591, 680, 820
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 415
BsuRI GGCC 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 115, 567, 1053
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 6 cut(s) 31, 75, 269, 588, 832, 864
Cac8I GCNNGC 1 cut(s) 844
CaiI CAGNNNCTG 2 cut(s) 616, 728
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 842
Cfr13I GGNCC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 822
CviAII CATG 4 cut(s) 158, 289, 959, 1058
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 5 cut(s) 198, 203, 423, 721, 993
DpnI GATC 7 cut(s) 156, 168, 181, 620, 804, 818, 998
DpnII GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Eam1104I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
EarI CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
Eco130I CCWWGG 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 2 cut(s) 890, 1071
EcoT14I CCWWGG 1 cut(s) 1062
EcoT22I ATGCAT 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 1062
FaeI CATG 4 cut(s) 161, 292, 962, 1061
FaqI GGGAC 5 cut(s) 59, 293, 308, 504, 844
FatI CATG 4 cut(s) 157, 288, 958, 1057
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 605, 669, 809
FokI GGATG 3 cut(s) 122, 554, 1040
Fsp4HI GCNGC 3 cut(s) 605, 669, 809
GlaI GCGC 1 cut(s) 841
GluI GCNGC 3 cut(s) 605, 669, 809
HaeIII GGCC 1 cut(s) 1020
HhaI GCGC 1 cut(s) 842
Hin1II CATG 4 cut(s) 161, 292, 962, 1061
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 6 cut(s) 434, 725, 749, 970, 983, 1011
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 7 cut(s) 90, 171, 426, 724, 730, 748, 975
Hpy188III TCNNGA 2 cut(s) 289, 876
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 4 cut(s) 26, 70, 583, 835
HpyCH4V TGCA 5 cut(s) 267, 607, 646, 896, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 610, 665
HpyF3I CTNAG 5 cut(s) 198, 203, 423, 721, 993
Hsp92II CATG 4 cut(s) 161, 292, 962, 1061
HspAI GCGC 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 2 cut(s) 881, 1096
Lsp1109I GCAGC 3 cut(s) 591, 680, 820
LweI GCATC 4 cut(s) 368, 576, 655, 1018
MalI GATC 7 cut(s) 156, 168, 181, 620, 804, 818, 998
MboI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
MhlI GDGCHC 2 cut(s) 588, 866
MluCI AATT 7 cut(s) 9, 474, 558, 633, 857, 891, 1048
MlyI GAGTC 3 cut(s) 443, 743, 992
MmeI TCCRAC 2 cut(s) 646, 1095
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 252, 610, 665
NdeII GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
NlaIII CATG 4 cut(s) 161, 292, 962, 1061
NlaIV GGNNCC 2 cut(s) 420, 511
NsiI ATGCAT 1 cut(s) 648
PagI TCATGA 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 909
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 3 cut(s) 725, 970, 1011
PflMI CCANNNNNTGG 1 cut(s) 1063
PkrI GCNGC 3 cut(s) 606, 670, 810
PleI GAGTC 3 cut(s) 442, 743, 991
PpsI GAGTC 3 cut(s) 442, 743, 991
PspN4I GGNNCC 2 cut(s) 420, 511
PspPI GGNCC 1 cut(s) 510
PstNI CAGNNNCTG 2 cut(s) 616, 728
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 1 cut(s) 1035
SatI GCNGC 3 cut(s) 605, 669, 809
Sau3AI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 3 cut(s) 443, 743, 992
SduI GDGCHC 2 cut(s) 588, 866
SfaNI GCATC 4 cut(s) 368, 576, 655, 1018
SfcI CTRYAG 2 cut(s) 49, 579
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 247, 374, 850
SmoI CTYRAG 3 cut(s) 247, 374, 850
Sse9I AATT 7 cut(s) 9, 474, 558, 633, 857, 891, 1048
SsiI CCGC 1 cut(s) 542
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 4 cut(s) 26, 70, 583, 835
TasI AATT 7 cut(s) 9, 474, 558, 633, 857, 891, 1048
TfiI GAWTC 3 cut(s) 725, 970, 1011
Tru1I TTAA 1 cut(s) 1035
Tru9I TTAA 1 cut(s) 1035
TscAI CASTG 6 cut(s) 31, 75, 269, 588, 832, 871
TseI GCWGC 3 cut(s) 604, 668, 808
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 6 cut(s) 31, 75, 269, 588, 832, 871
Van91I CCANNNNNTGG 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 903
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.