Rroxscaffold_1G00074290
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007324
Physical Location & Seq
Forward (+)
95334296 .. 95335980
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074290.1

Sequence Viewer

Length: 726 bp
ATGGCTGAAATTCAAGGAGGGAACAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATTGAGGCAAAGAAGATGGATGAGGAGAGAAGAATAATGAAGAGAAGTGGTAGTGGTAGTGGGGATCATGGGGCTGATCAGACCCCCAGATCAATAAGCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAGTGCAATGATAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAAGAGAAGTGTAGGGGTGGGAGAGAATAAGGAGTTGGCATCTTACTGGAAGCTTGAGAAGAGTGAGAGGAAGGAGAGGAACTTGCCCACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTGGTCGGTGGTGGTGGTGCTTCTGTTTCTGGGTCCATTAGTCCCAACCCCAACATTGGATATGCGGTGGAGAGACCCATAATTAGTGGCATCCATCAGTCTACAGTGCTCTCTCCTCCTCCTGTGCTGCAACAGCACCTGATCCAACCGCAACCAATTTCAGCAATGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCTCTTCCATATTCTCAACCTATTCCCCCAGTAGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

9.03

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 111 2.4e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 2 cut(s) 578, 717
AciI CCGC 2 cut(s) 542, 626
AclWI GGATC 2 cut(s) 162, 613
AcsI RAATTY 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 4 cut(s) 197, 202, 373, 671
AluI AGCT 4 cut(s) 197, 202, 373, 671
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 71, 544
AlwI GGATC 2 cut(s) 162, 613
AlwNI CAGNNNCTG 1 cut(s) 616
ApeKI GCWGC 2 cut(s) 604, 668
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 510
AvaII GGWCC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 591, 680
BccI CCATC 4 cut(s) 100, 201, 460, 579
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 71, 544
BfmI CTRYAG 2 cut(s) 49, 579
BisI GCNGC 2 cut(s) 605, 669
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 606, 670
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 420, 511
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 3 cut(s) 368, 576, 655
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 268, 395
BsaI GGTCTC 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 4 cut(s) 68, 262, 371, 713
Bse3DI GCAATG 2 cut(s) 274, 648
BseGI GGATG 2 cut(s) 115, 567
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 2 cut(s) 274, 648
BseMII CTCAG 3 cut(s) 189, 194, 437
BseNI ACTGG 4 cut(s) 68, 262, 371, 713
BseRI GAGGAG 4 cut(s) 128, 582, 585, 675
BseXI GCAGC 2 cut(s) 591, 680
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 4 cut(s) 59, 293, 308, 504
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 71, 544
BsmFI GGGAC 4 cut(s) 59, 293, 308, 504
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 4 cut(s) 154, 166, 179, 618
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 2 cut(s) 542, 626
BspCNI CTCAG 3 cut(s) 190, 195, 436
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 420, 511
BspPI GGATC 2 cut(s) 162, 613
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 274, 648
BsrI ACTGG 4 cut(s) 68, 262, 371, 713
BssMI GATC 4 cut(s) 154, 166, 179, 618
Bst4CI ACNGT 3 cut(s) 26, 70, 583
Bst6I CTCTTC 5 cut(s) 125, 317, 374, 452, 693
BstDEI CTNAG 3 cut(s) 198, 203, 423
BstF5I GGATG 2 cut(s) 115, 567
BstKTI GATC 4 cut(s) 157, 169, 182, 621
BstMAI GTCTC 2 cut(s) 71, 544
BstMBI GATC 4 cut(s) 154, 166, 179, 618
BstMWI GCNNNNNNNGC 3 cut(s) 252, 610, 665
BstNSI RCATGY 1 cut(s) 724
BstSFI CTRYAG 2 cut(s) 49, 579
BstV1I GCAGC 2 cut(s) 591, 680
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 415
BtsCI GGATG 2 cut(s) 115, 567
BtsIMutI CAGTG 4 cut(s) 31, 75, 269, 588
CaiI CAGNNNCTG 1 cut(s) 616
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 510
CviAII CATG 3 cut(s) 158, 289, 721
CviJI RGCY 8 cut(s) 5, 164, 197, 202, 255, 373, 437, 671
CviKI_1 RGCY 8 cut(s) 5, 164, 197, 202, 255, 373, 437, 671
DdeI CTNAG 3 cut(s) 198, 203, 423
DpnI GATC 4 cut(s) 156, 168, 181, 620
DpnII GATC 4 cut(s) 154, 166, 179, 618
Eam1104I CTCTTC 5 cut(s) 125, 317, 374, 452, 693
EarI CTCTTC 5 cut(s) 125, 317, 374, 452, 693
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 648
FaeI CATG 3 cut(s) 161, 292, 724
FaiI YATR 9 cut(s) 159, 290, 318, 416, 432, 540, 557, 694, 722
FaqI GGGAC 4 cut(s) 59, 293, 308, 504
FatI CATG 3 cut(s) 157, 288, 720
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 2 cut(s) 578, 717
Fnu4HI GCNGC 2 cut(s) 605, 669
FokI GGATG 2 cut(s) 122, 554
Fsp4HI GCNGC 2 cut(s) 605, 669
GluI GCNGC 2 cut(s) 605, 669
Hin1II CATG 3 cut(s) 161, 292, 724
HindIII AAGCTT 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 579, 718
Hpy188I TCNGA 3 cut(s) 90, 171, 426
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 579, 718
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 26, 70, 583
HpyCH4V TGCA 3 cut(s) 267, 607, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 610, 665
HpyF3I CTNAG 3 cut(s) 198, 203, 423
Hsp92II CATG 3 cut(s) 161, 292, 724
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 4 cut(s) 154, 166, 179, 618
Lsp1109I GCAGC 2 cut(s) 591, 680
LweI GCATC 3 cut(s) 368, 576, 655
MalI GATC 4 cut(s) 156, 168, 181, 620
MboI GATC 4 cut(s) 154, 166, 179, 618
MboII GAAGA 9 cut(s) 115, 132, 142, 233, 247, 334, 391, 469, 680
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 4 cut(s) 9, 474, 558, 633
MmeI TCCRAC 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 252, 610, 665
NdeII GATC 4 cut(s) 154, 166, 179, 618
NlaIII CATG 3 cut(s) 161, 292, 724
NlaIV GGNNCC 2 cut(s) 420, 511
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 1 cut(s) 724
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 720
PkrI GCNGC 2 cut(s) 606, 670
PscI ACATGT 1 cut(s) 720
PspN4I GGNNCC 2 cut(s) 420, 511
PspPI GGNCC 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 413
SatI GCNGC 2 cut(s) 605, 669
Sau3AI GATC 4 cut(s) 154, 166, 179, 618
Sau96I GGNCC 1 cut(s) 510
SduI GDGCHC 1 cut(s) 588
SetI ASST 8 cut(s) 199, 204, 375, 450, 618, 673, 685, 706
SfaNI GCATC 3 cut(s) 368, 576, 655
SfcI CTRYAG 2 cut(s) 49, 579
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 247, 374
SmoI CTYRAG 2 cut(s) 247, 374
Sse9I AATT 4 cut(s) 9, 474, 558, 633
SsiI CCGC 2 cut(s) 542, 626
TaaI ACNGT 3 cut(s) 26, 70, 583
TasI AATT 4 cut(s) 9, 474, 558, 633
TscAI CASTG 4 cut(s) 31, 75, 269, 588
TseI GCWGC 2 cut(s) 604, 668
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 4 cut(s) 31, 75, 269, 588
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 724
XmiI GTMKAC 2 cut(s) 578, 717
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.