Rh5DG140700
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007324
Physical Location & Seq
Forward (+)
14380403 .. 14381917
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG140700.1

Sequence Viewer

Length: 921 bp
ATGGCTGAAATTCAAGGAGGGAACAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATTGAGGCAAAGAAGATGGATGAGGAGAGAAGAATAATGAAGAGAAGTGGTAGTGGTAGTGGGGATCATGGGGCTGATCAGACCCCCAGATCAATAAGCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAAGAGAAGTGTAGGGGTGGGAGAGAATAAGGAGTTGGCATCTTACTGGAAGCTTGAGAAGAGTGAGAGGAAGGAGAGGAACTTGCCCACAAATATGGTGCCTCAGATTTATGAGTCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTAGTCGGTGGTGGTGGTGCTTCTGTTTCTGGGTCCATTAGTCCCAACCCCAACATTGGATATGCGGTGGAGAGACCCATAATTAGTGGCATCCATCAGTCTACAGTGCTCTCTCCTCCTCCTGTGCTGCAACAGCACCTGATCCAACCACAACCAATTTCAGCAATGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCTCTTCCATATTCTCAACCTATTCCCCCAGTAGAAGCTCTTCAGGGCTGTGAGGAGAGTGAAGAGAGGAGGCACAGAGAGATTTTGAGTTTGCATGAGAGGAGGATTCAGATTGAAGAGTCTAAAACTGAGATCAACAGGCAAGGAATCAATGGCCTTGTTGATGCCATTAACAAACTTGCTAATTCCATCCATGCCTTGGCTTCCAACAGCAACCAATCTTCAGCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

306

Amino Acids

34.32

Weight (kDa)

8.77

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 111 2.5e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 883
AccI GTMKAC 1 cut(s) 578
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 162, 613
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 710, 891
AfiI CCNNNNNNNGG 2 cut(s) 533, 883
AgsI TTSAA 2 cut(s) 14, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 6 cut(s) 197, 202, 373, 671, 722, 911
AluI AGCT 6 cut(s) 197, 202, 373, 671, 722, 911
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 71, 544
AlwI GGATC 2 cut(s) 162, 613
AlwNI CAGNNNCTG 1 cut(s) 616
AoxI GGCC 1 cut(s) 838
ApeKI GCWGC 2 cut(s) 604, 668
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 723
AspS9I GGNCC 1 cut(s) 510
AvaII GGWCC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 418
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 591, 680
BccI CCATC 5 cut(s) 100, 201, 460, 579, 881
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 71, 544
BfmI CTRYAG 2 cut(s) 49, 579
BisI GCNGC 2 cut(s) 605, 669
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 606, 670
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 420, 511
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 4 cut(s) 368, 576, 655, 838
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 268, 395
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 882
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 883
Bse1I ACTGG 4 cut(s) 68, 262, 371, 713
Bse3DI GCAATG 2 cut(s) 274, 648
BseDI CCNNGG 1 cut(s) 882
BseGI GGATG 3 cut(s) 115, 567, 873
BseLI CCNNNNNNNGG 2 cut(s) 533, 883
BseMI GCAATG 2 cut(s) 274, 648
BseMII CTCAG 4 cut(s) 189, 194, 437, 804
BseNI ACTGG 4 cut(s) 68, 262, 371, 713
BseRI GAGGAG 7 cut(s) 128, 582, 585, 675, 752, 766, 799
BseXI GCAGC 2 cut(s) 591, 680
BshFI GGCC 1 cut(s) 840
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 4 cut(s) 59, 293, 308, 504
BslI CCNNNNNNNGG 2 cut(s) 533, 883
BsmAI GTCTC 2 cut(s) 71, 544
BsmFI GGGAC 4 cut(s) 59, 293, 308, 504
BsnI GGCC 1 cut(s) 840
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 5 cut(s) 154, 166, 179, 618, 816
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 840
BspCNI CTCAG 4 cut(s) 190, 195, 436, 805
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 420, 511
BspPI GGATC 2 cut(s) 162, 613
BspQI GCTCTTC 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 274, 648
BsrI ACTGG 4 cut(s) 68, 262, 371, 713
BssECI CCNNGG 1 cut(s) 882
BssMI GATC 5 cut(s) 154, 166, 179, 618, 816
BssT1I CCWWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 26, 70, 583
Bst6I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 729, 741, 795
BstDEI CTNAG 4 cut(s) 198, 203, 423, 813
BstF5I GGATG 3 cut(s) 115, 567, 873
BstKTI GATC 5 cut(s) 157, 169, 182, 621, 819
BstMAI GTCTC 2 cut(s) 71, 544
BstMBI GATC 5 cut(s) 154, 166, 179, 618, 816
BstMWI GCNNNNNNNGC 3 cut(s) 252, 610, 665
BstSFI CTRYAG 2 cut(s) 49, 579
BstV1I GCAGC 2 cut(s) 591, 680
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 415
BsuRI GGCC 1 cut(s) 840
BtsCI GGATG 3 cut(s) 115, 567, 873
BtsIMutI CAGTG 4 cut(s) 31, 75, 269, 588
CaiI CAGNNNCTG 1 cut(s) 616
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 510
CviAII CATG 4 cut(s) 158, 289, 779, 878
DdeI CTNAG 4 cut(s) 198, 203, 423, 813
DpnI GATC 5 cut(s) 156, 168, 181, 620, 818
DpnII GATC 5 cut(s) 154, 166, 179, 618, 816
Eam1104I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 729, 741, 795
EarI CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 729, 741, 795
Eco130I CCWWGG 1 cut(s) 882
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 2 cut(s) 710, 891
EcoT14I CCWWGG 1 cut(s) 882
EcoT22I ATGCAT 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 4 cut(s) 161, 292, 782, 881
FaqI GGGAC 4 cut(s) 59, 293, 308, 504
FatI CATG 4 cut(s) 157, 288, 778, 877
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 605, 669
FokI GGATG 3 cut(s) 122, 554, 860
Fsp4HI GCNGC 2 cut(s) 605, 669
GluI GCNGC 2 cut(s) 605, 669
HaeIII GGCC 1 cut(s) 840
Hin1II CATG 4 cut(s) 161, 292, 782, 881
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 4 cut(s) 434, 790, 803, 831
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 4 cut(s) 90, 171, 426, 795
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 26, 70, 583
HpyCH4V TGCA 4 cut(s) 267, 607, 646, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 610, 665
HpyF3I CTNAG 4 cut(s) 198, 203, 423, 813
Hsp92II CATG 4 cut(s) 161, 292, 782, 881
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 5 cut(s) 154, 166, 179, 618, 816
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 2 cut(s) 591, 680
LweI GCATC 4 cut(s) 368, 576, 655, 838
MalI GATC 5 cut(s) 156, 168, 181, 620, 818
MboI GATC 5 cut(s) 154, 166, 179, 618, 816
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 5 cut(s) 9, 474, 558, 633, 868
MlyI GAGTC 2 cut(s) 443, 812
MmeI TCCRAC 2 cut(s) 646, 915
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 1 cut(s) 855
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 252, 610, 665
NdeII GATC 5 cut(s) 154, 166, 179, 618, 816
NlaIII CATG 4 cut(s) 161, 292, 782, 881
NlaIV GGNNCC 2 cut(s) 420, 511
NsiI ATGCAT 1 cut(s) 648
PagI TCATGA 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 729
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 790, 831
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 2 cut(s) 606, 670
PleI GAGTC 2 cut(s) 442, 811
PpsI GAGTC 2 cut(s) 442, 811
PspN4I GGNNCC 2 cut(s) 420, 511
PspPI GGNCC 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 2 cut(s) 605, 669
Sau3AI GATC 5 cut(s) 154, 166, 179, 618, 816
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 2 cut(s) 443, 812
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 4 cut(s) 368, 576, 655, 838
SfcI CTRYAG 2 cut(s) 49, 579
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 247, 374
SmoI CTYRAG 2 cut(s) 247, 374
Sse9I AATT 5 cut(s) 9, 474, 558, 633, 868
SsiI CCGC 1 cut(s) 542
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 3 cut(s) 26, 70, 583
TasI AATT 5 cut(s) 9, 474, 558, 633, 868
TfiI GAWTC 2 cut(s) 790, 831
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 4 cut(s) 31, 75, 269, 588
TseI GCWGC 2 cut(s) 604, 668
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 4 cut(s) 31, 75, 269, 588
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.