MD05G1256800.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0007324
Physical Location & Seq
Reverse (-)
38775238 .. 38776798
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1256800.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGGCTGAACAAGGAGGAAATGGTACTAGCCGTGTGATCATGAGGGACTACAGGAAAGGGAACTGGACAGAGGGGGAGACAATGATTTTGATAGAGGCAAAGAAGATGGATGATGAGAGAAGAATGAAGAGAAGTGGTGGTGGGGAAGGTGGTAGTAGTGGTGGAGGAACTGATCAGACAACAAGATCAATGAGCAAACCATCTGAGCTGAGGTGGAAGTGGGTGGAGGACTACTGTTGGAAAAAAGGTTGTTTGAGAAACCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGATTACAAGAAAGTGAGAGAATATGAGAGGAAGGTTACTAACGTGGGAGAAGGGAAAGGAGAAGAAGGTAGTGCATCGTATTGGAAGCTTGAGAAGAATGAGAGGAAGGAGAGGAACTTGCCTACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTGGATGTGGTGGAGAGGAGAGAAGCTGGTGGTGGTGGTTATCAGATTAGAGGTCATGAGGTGGTGGGGGGAGCTTCTGTTTCTGGTCCAAATGTTGGGATTAATCCAAATATTGGGTATGGTTTGGAGAGGCCTATAATTAGTACAACTAATGTTCATCAGCAGCCTTCTTCTTCACTGCCTTCTCCTCCAGTTTTGCAACATCATCATCATCAAATCTCAGTTCCAACAATTGCAGCATTGCCACTTCTTCCACCTGCTCCACTGGCAGCCCAACCACCACTTGCTCTCCCATACGCACAGGTTATGCCCACAGTAGATTCCGATACAAGTGAGCATTCAGACTCGCCAGCTAAAAGGAGGAGGAGGGCAAGTGGAAGAGGTGGCGGTGGTGGTGAAGATCAAGGAGGAACCAGTGGAACTGTGAGTGCTAGCATCTCAAGTGAAGTGGGAACTGCCATCGCCAGAGGTGCTTCCGTGATTGCAGAAGCACTTCAGGGCTGTGAGGAGAGAGAAGAAAGGAGGCACAGACAGATGTTGAATTTGCATGAGAGAAGGCTACAGATCGAGGAAACTAAGACTGAGATCAACAGGCAAGGCATTAATGGCCTCACTGATGCCATTAACAAGCTTGCAAACTCCATCCATGCCTTGGCTTCCAACAAAAACCAACAGCCACCTCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

382

Amino Acids

41.75

Weight (kDa)

8.76

Isoelectric Point (pI)

59.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 111 2.5e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 721
Acc36I ACCTGC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 3 cut(s) 551, 569, 1108
AciI CCGC 1 cut(s) 843
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 1 cut(s) 935
AfaI GTAC 2 cut(s) 25, 601
AfiI CCNNNNNNNGG 3 cut(s) 551, 569, 1108
AgsI TTSAA 1 cut(s) 997
AluBI AGCT 6 cut(s) 208, 388, 482, 530, 809, 1087
AluI AGCT 6 cut(s) 208, 388, 482, 530, 809, 1087
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 2 cut(s) 587, 1063
ApeKI GCWGC 3 cut(s) 619, 692, 725
ApoI RAATTY 1 cut(s) 997
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AseI ATTAAT 2 cut(s) 558, 1059
Asp700I GAANNNNTTC 1 cut(s) 948
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 863
AsuNHI GCTAGC 1 cut(s) 887
AvaII GGWCC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 631, 704, 737
BccI CCATC 4 cut(s) 100, 208, 923, 1106
BceAI ACGGC 1 cut(s) 15
BclI TGATCA 2 cut(s) 36, 172
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 2 cut(s) 27, 888
BfmI CTRYAG 2 cut(s) 49, 1016
BfuAI ACCTGC 1 cut(s) 721
BisI GCNGC 3 cut(s) 620, 693, 726
BlsI GCNGC 3 cut(s) 621, 694, 727
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 435, 868
BmsI GCATC 3 cut(s) 383, 900, 1063
BmtI GCTAGC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 410, 880
BsaJI CCNNGG 1 cut(s) 1107
BsaXI ACNNNNNCTCC 6 cut(s) 519, 549, 729, 759, 814, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 569, 1108
Bse1I ACTGG 5 cut(s) 68, 268, 647, 726, 870
Bse3DI GCAATG 2 cut(s) 280, 695
BseDI CCNNGG 1 cut(s) 1107
BseGI GGATG 3 cut(s) 115, 466, 1098
BseLI CCNNNNNNNGG 3 cut(s) 551, 569, 1108
BseMI GCAATG 2 cut(s) 280, 695
BseMII CTCAG 5 cut(s) 195, 200, 452, 690, 1029
BseNI ACTGG 5 cut(s) 68, 268, 647, 726, 870
BseRI GAGGAG 5 cut(s) 487, 633, 832, 835, 977
BseXI GCAGC 3 cut(s) 631, 704, 737
BshFI GGCC 2 cut(s) 589, 1065
BshNI GGYRCC 1 cut(s) 433
BslFI GGGAC 2 cut(s) 59, 299
BslI CCNNNNNNNGG 3 cut(s) 551, 569, 1108
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 59, 299
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 2 cut(s) 589, 1065
Bsp143I GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
BspACI CCGC 1 cut(s) 843
BspANI GGCC 2 cut(s) 589, 1065
BspCNI CTCAG 5 cut(s) 196, 201, 451, 689, 1030
BspHI TCATGA 3 cut(s) 39, 294, 511
BspLI GGNNCC 2 cut(s) 435, 868
BspMI ACCTGC 1 cut(s) 721
BspOI GCTAGC 1 cut(s) 891
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 2 cut(s) 280, 695
BsrI ACTGG 5 cut(s) 68, 268, 647, 726, 870
BssECI CCNNGG 1 cut(s) 1107
BssMI GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
BssT1I CCWWGG 1 cut(s) 1107
Bst4CI ACNGT 3 cut(s) 236, 772, 880
Bst6I CTCTTC 2 cut(s) 122, 829
BstC8I GCNNGC 3 cut(s) 807, 889, 1089
BstDEI CTNAG 6 cut(s) 204, 209, 438, 676, 1032, 1038
BstF5I GGATG 3 cut(s) 115, 466, 1098
BstKTI GATC 6 cut(s) 39, 175, 188, 859, 1023, 1044
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
BstMWI GCNNNNNNNGC 3 cut(s) 722, 926, 1062
BstSFI CTRYAG 2 cut(s) 49, 1016
BstV1I GCAGC 3 cut(s) 631, 704, 737
BsuRI GGCC 2 cut(s) 589, 1065
BtgZI GCGATG 1 cut(s) 901
BtsCI GGATG 3 cut(s) 115, 466, 1098
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 5 cut(s) 275, 632, 719, 877, 1068
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 3 cut(s) 807, 889, 1089
CciI TCATGA 3 cut(s) 39, 294, 511
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 2 cut(s) 24, 600
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
CviAII CATG 5 cut(s) 40, 295, 512, 1004, 1103
CviQI GTAC 2 cut(s) 24, 600
DdeI CTNAG 6 cut(s) 204, 209, 438, 676, 1032, 1038
DpnI GATC 6 cut(s) 38, 174, 187, 858, 1022, 1043
DpnII GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
Eam1104I CTCTTC 2 cut(s) 122, 829
EarI CTCTTC 2 cut(s) 122, 829
Eco130I CCWWGG 1 cut(s) 1107
Eco147I AGGCCT 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 1107
ErhI CCWWGG 1 cut(s) 1107
FaeI CATG 5 cut(s) 43, 298, 515, 1007, 1106
FaqI GGGAC 2 cut(s) 59, 299
FatI CATG 5 cut(s) 39, 294, 511, 1003, 1102
FbaI TGATCA 2 cut(s) 36, 172
Fnu4HI GCNGC 3 cut(s) 620, 693, 726
FokI GGATG 3 cut(s) 122, 473, 1085
Fsp4HI GCNGC 3 cut(s) 620, 693, 726
FspBI CTAG 2 cut(s) 27, 888
GluI GCNGC 3 cut(s) 620, 693, 726
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 2 cut(s) 589, 1065
Hin1II CATG 5 cut(s) 43, 298, 515, 1007, 1106
HindIII AAGCTT 2 cut(s) 386, 1085
HinfI GANTC 2 cut(s) 776, 800
HphI GGTGA 1 cut(s) 863
Hpy188I TCNGA 6 cut(s) 177, 205, 441, 501, 781, 799
Hpy188III TCNNGA 3 cut(s) 40, 295, 512
HpyAV CCTTC 8 cut(s) 140, 325, 344, 359, 400, 633, 648, 1005
HpyCH4III ACNGT 3 cut(s) 236, 772, 880
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 7 cut(s) 273, 374, 655, 692, 941, 1003, 1091
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 926, 1062
HpyF3I CTNAG 6 cut(s) 204, 209, 438, 676, 1032, 1038
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 5 cut(s) 43, 298, 515, 1007, 1106
Ksp22I TGATCA 2 cut(s) 36, 172
Kzo9I GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
LmnI GCTCC 2 cut(s) 527, 721
Lsp1109I GCAGC 3 cut(s) 631, 704, 737
LweI GCATC 3 cut(s) 383, 900, 1063
MaeI CTAG 2 cut(s) 27, 888
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 334
MalI GATC 6 cut(s) 38, 174, 187, 858, 1022, 1043
MboI GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
MfeI CAATTG 1 cut(s) 687
MluCI AATT 4 cut(s) 594, 687, 997, 1141
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 3 cut(s) 218, 707, 1140
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 3 cut(s) 558, 1059, 1080
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 793
MwoI GCNNNNNNNGC 3 cut(s) 722, 926, 1062
NdeII GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
NheI GCTAGC 1 cut(s) 887
NlaIII CATG 5 cut(s) 43, 298, 515, 1007, 1106
NlaIV GGNNCC 2 cut(s) 435, 868
PagI TCATGA 3 cut(s) 39, 294, 511
PaqCI CACCTGC 1 cut(s) 721
PceI AGGCCT 1 cut(s) 589
PctI GAATGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 1 cut(s) 776
PflMI CCANNNNNTGG 3 cut(s) 551, 569, 1108
PkrI GCNGC 3 cut(s) 621, 694, 727
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PshBI ATTAAT 2 cut(s) 558, 1059
PspN4I GGNNCC 2 cut(s) 435, 868
PspPI GGNCC 1 cut(s) 542
RsaI GTAC 2 cut(s) 25, 601
RsaNI GTAC 2 cut(s) 24, 600
SaqAI TTAA 3 cut(s) 558, 1059, 1080
SatI GCNGC 3 cut(s) 620, 693, 726
Sau3AI GATC 6 cut(s) 36, 172, 185, 856, 1020, 1041
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 1 cut(s) 794
SfaNI GCATC 3 cut(s) 383, 900, 1063
SfcI CTRYAG 2 cut(s) 49, 1016
SinI GGWCC 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 389, 895
SmoI CTYRAG 2 cut(s) 389, 895
Sse9I AATT 4 cut(s) 594, 687, 997, 1141
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 1 cut(s) 843
SspI AATATT 1 cut(s) 568
SspMI CTAG 2 cut(s) 27, 888
StuI AGGCCT 1 cut(s) 589
StyI CCWWGG 1 cut(s) 1107
TaaI ACNGT 3 cut(s) 236, 772, 880
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 1023
TasI AATT 4 cut(s) 594, 687, 997, 1141
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 1 cut(s) 776
Tru1I TTAA 3 cut(s) 558, 1059, 1080
Tru9I TTAA 3 cut(s) 558, 1059, 1080
TscAI CASTG 5 cut(s) 275, 639, 726, 877, 1075
TseI GCWGC 3 cut(s) 619, 692, 725
TspDTI ATGAA 2 cut(s) 140, 602
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 5 cut(s) 275, 639, 726, 877, 1075
Van91I CCANNNNNTGG 3 cut(s) 551, 569, 1108
VpaK11BI GGWCC 1 cut(s) 542
VspI ATTAAT 2 cut(s) 558, 1059
XapI RAATTY 1 cut(s) 997
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 2 cut(s) 27, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.