Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007324

Physical Location & Seq

Genomic Coordinates Reverse (-)

25446202 .. 25447447

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGATTTTGATAGAGGCAAAGAAGATGGATGATGAGAGAAGAATGAAGAGAACTGGTGGTGGGGAAGGTGGTAGTAGTGGTGGAGGAACTGATCAAACAACAAGATCAATGAGCAAACCAGCTGAGCTGAGGTGGAAATGGGTGGAGGACTACTGTTGGAAAAAAGGTTGTTTGAGAAACCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGATTACAAGAAAGTGAGAGAATATGAGAGGAAGATTACTAGTGTGGGAGAAGGGAAAGGAGAAGAAGGTAGTGCATCGTATTGGAAGCTTGAGAAGAATGAGAGGAAGGAGAGGAACTTGCCTACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTGGATGTGGTGGAGAGGAGAGAAGCTGCTGCTGCTGCTGGTTATCAGATTAGAGGTCATGAGGTGGTGGGAGGAGCCTCTGTTTCTGGTCCAAATGTTGGGATTAATCCAAATATTGGGTATGGTTTGGAGAGGCCTATAATTAATACAACTAATGTTCATCAGCAGCCTTCTTCTTCACTGCCTTCTCCTCCAGTTTTGCAACATCATCATCATCATCAAATCTCAGTTCCAACAATTGCGGCATTGCCACTTCTTCCACCTGCTCCACTGGCAGCCCAACCACCACCTGCTCTCCCATACGCACAGGTTATGCCCACACAGATTCCGATACAAGTGAGCATTCAAACTCGCCAGCTAAAAGGAGGAGGAGGGCAAGTGGAAGAGGTGGCGGTGGTGGTGAAGATCAAGGAGGAACCAGTGGAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

283

Amino Acids

31.32

Weight (kDa)

8.84

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31310 AT2G35640
fragaria_vesca	FvH4_3g11900 FvH4_3g11900 FvH4_3g11900 FvH4_3g11900
malus_domestica	MD05G1256800.v1.1 MD10G1237300.v1.1
prunus_persica	Prupe.4G107000_v2.0.a1
pyrus_communis	pycom05g23610
rosa_chinensis	RchiOBHm_Chr5g0019411
rosa_laevigata	RLG00000032442
rosa_multiflora	Rmu_co8327627.1_g000001 Rmu_co8471075.1_g000001 Rmu_sc0002759.1_g000041 Rmu_sc0005292.1_g000052
rosa_roxburghii	Rroxscaffold_1G00058630 Rroxscaffold_1G00074290
rosa_rugosa	Rorug05G0050800 Rorug05G0050900
rosa_samantha	Rh5AG141100 Rh5BG140100 Rh5CG151700 Rh5DG140700
rosa_wichuraiana	Rw5G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	688, 715
Acc36I	ACCTGC	2 cut(s)	688, 715
AccB1I	GGYRCC	1 cut(s)	394
AccB7I	CCANNNNNTGG	2 cut(s)	515, 533
AciI	CCGC	2 cut(s)	659, 809
AfiI	CCNNNNNNNGG	2 cut(s)	515, 533
AgsI	TTSAA	1 cut(s)	764
AhlI	ACTAGT	1 cut(s)	299
AluBI	AGCT	5 cut(s)	164, 169, 349, 443, 775
AluI	AGCT	5 cut(s)	164, 169, 349, 443, 775
Alw26I	GTCTC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	6 cut(s)	443, 446, 449, 452, 583, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AseI	ATTAAT	2 cut(s)	522, 561
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	829
AvaII	GGWCC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	6 cut(s)	430, 433, 436, 439, 595, 704
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	2 cut(s)	688, 715
BisI	GCNGC	7 cut(s)	444, 447, 450, 453, 584, 660, 693
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	7 cut(s)	445, 448, 451, 454, 585, 661, 694
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	396, 493, 834
BmsI	GCATC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	371
BsaXI	ACNNNNNCTCC	6 cut(s)	483, 513, 696, 726, 780, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 533
Bse1I	ACTGG	6 cut(s)	29, 100, 229, 611, 693, 836
Bse3DI	GCAATG	2 cut(s)	241, 662
BseGI	GGATG	2 cut(s)	76, 427
BseLI	CCNNNNNNNGG	2 cut(s)	515, 533
BseMI	GCAATG	2 cut(s)	241, 662
BseMII	CTCAG	4 cut(s)	156, 161, 413, 657
BseNI	ACTGG	6 cut(s)	29, 100, 229, 611, 693, 836
BseRI	GAGGAG	5 cut(s)	448, 504, 597, 798, 801
BseXI	GCAGC	6 cut(s)	430, 433, 436, 439, 595, 704
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	20, 260
BslI	CCNNNNNNNGG	2 cut(s)	515, 533
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	20, 260
BsmI	GAATGC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	133, 146, 822
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	659, 809
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	4 cut(s)	157, 162, 412, 656
BspHI	TCATGA	2 cut(s)	255, 475
BspLI	GGNNCC	3 cut(s)	396, 493, 834
BspMI	ACCTGC	2 cut(s)	688, 715
BspT107I	GGYRCC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	241, 662
BsrI	ACTGG	6 cut(s)	29, 100, 229, 611, 693, 836
BssMI	GATC	3 cut(s)	133, 146, 822
Bst4CI	ACNGT	3 cut(s)	31, 197, 846
Bst6I	CTCTTC	2 cut(s)	83, 795
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	4 cut(s)	165, 170, 399, 643
BstF5I	GGATG	2 cut(s)	76, 427
BstKTI	GATC	3 cut(s)	136, 149, 825
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	133, 146, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 452, 689
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	6 cut(s)	430, 433, 436, 439, 595, 704
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	76, 427
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	5 cut(s)	36, 236, 596, 686, 843
BveI	ACCTGC	2 cut(s)	688, 715
Cac8I	GCNNGC	1 cut(s)	773
CciI	TCATGA	2 cut(s)	255, 475
Cfr13I	GGNCC	1 cut(s)	506
CviAII	CATG	2 cut(s)	256, 476
DdeI	CTNAG	4 cut(s)	165, 170, 399, 643
DpnI	GATC	3 cut(s)	135, 148, 824
DpnII	GATC	3 cut(s)	133, 146, 822
Eam1104I	CTCTTC	2 cut(s)	83, 795
EarI	CTCTTC	2 cut(s)	83, 795
Eco147I	AGGCCT	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	506
FaeI	CATG	2 cut(s)	259, 479
FaiI	YATR	9 cut(s)	257, 285, 392, 408, 477, 540, 557, 718, 731
FaqI	GGGAC	2 cut(s)	20, 260
FatI	CATG	2 cut(s)	255, 475
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	7 cut(s)	444, 447, 450, 453, 584, 660, 693
FokI	GGATG	2 cut(s)	83, 434
Fsp4HI	GCNGC	7 cut(s)	444, 447, 450, 453, 584, 660, 693
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	7 cut(s)	444, 447, 450, 453, 584, 660, 693
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	553
Hin1II	CATG	2 cut(s)	259, 479
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	742
HphI	GGTGA	1 cut(s)	829
Hpy188I	TCNGA	3 cut(s)	402, 465, 747
Hpy188III	TCNNGA	2 cut(s)	256, 476
HpyAV	CCTTC	6 cut(s)	101, 305, 320, 361, 597, 612
HpyCH4III	ACNGT	3 cut(s)	31, 197, 846
HpyCH4V	TGCA	3 cut(s)	234, 335, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 452, 689
HpyF3I	CTNAG	4 cut(s)	165, 170, 399, 643
Hsp92II	CATG	2 cut(s)	259, 479
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 146, 822
LmnI	GCTCC	2 cut(s)	491, 688
Lsp1109I	GCAGC	6 cut(s)	430, 433, 436, 439, 595, 704
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	1 cut(s)	300
MalI	GATC	3 cut(s)	135, 148, 824
MboI	GATC	3 cut(s)	133, 146, 822
MfeI	CAATTG	1 cut(s)	654
MluCI	AATT	2 cut(s)	558, 654
MmeI	TCCRAC	2 cut(s)	179, 674
MseI	TTAA	2 cut(s)	522, 561
MspA1I	CMGCKG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	449, 452, 689
NdeII	GATC	3 cut(s)	133, 146, 822
NlaIII	CATG	2 cut(s)	259, 479
NlaIV	GGNNCC	3 cut(s)	396, 493, 834
PagI	TCATGA	2 cut(s)	255, 475
PaqCI	CACCTGC	2 cut(s)	688, 715
PceI	AGGCCT	1 cut(s)	553
PctI	GAATGC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	742
PflMI	CCANNNNNTGG	2 cut(s)	515, 533
PkrI	GCNGC	7 cut(s)	445, 448, 451, 454, 585, 661, 694
PshBI	ATTAAT	2 cut(s)	522, 561
PspN4I	GGNNCC	3 cut(s)	396, 493, 834
PspPI	GGNCC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	522, 561
SatI	GCNGC	7 cut(s)	444, 447, 450, 453, 584, 660, 693
Sau3AI	GATC	3 cut(s)	133, 146, 822
Sau96I	GGNCC	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	2 cut(s)	558, 654
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	2 cut(s)	659, 809
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	553
TaaI	ACNGT	3 cut(s)	31, 197, 846
TasI	AATT	2 cut(s)	558, 654
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	2 cut(s)	522, 561
Tru9I	TTAA	2 cut(s)	522, 561
TscAI	CASTG	5 cut(s)	36, 236, 603, 693, 843
TseI	GCWGC	6 cut(s)	443, 446, 449, 452, 583, 692
TspDTI	ATGAA	2 cut(s)	101, 566
TspRI	CASTG	5 cut(s)	36, 236, 603, 693, 843
Van91I	CCANNNNNTGG	2 cut(s)	515, 533
VpaK11BI	GGWCC	1 cut(s)	506
VspI	ATTAAT	2 cut(s)	522, 561
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.