AT2G35640
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007324
Physical Location & Seq
Forward (+)
14982835 .. 14984339
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35640.1

Sequence Viewer

Length: 1023 bp
ATGGCTGACGCTGATCCATCGAGTGGTGAACAGATAGTTATGAGAGAGTGCAGAAAAGGGAATTGGACAGTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACCAGAGGCGTGTACGGCGATCGGAAAAACAACCTGAAGGCAGAAACAAACCAGCAGAGCTCCGGTGGAAATGGATAGAGGAGTATTGCTGGAGAAGAGGATGTTACCGCAACCAGAATCAGTGCAACGATAAGTGGGACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATCAAGGGTAGAATCGTCTTTTAACACCGTCACTTCTTCCTCTTACTGGAAGATGGACAAGACTGAGAGGAAAGAGAAGAACTTGCCGAGTAACATGTTGCCTCAGATATACGACGTGTTGTCTGAGCTTGTTGACAGAAAAACTCTTCCTTCCTCCTCCTCCGCCGCCGCCGCCGTAGGAAACGGTAACGGTGGCCAGATCCTAAGAGTTTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAGCCGATGCATCAAATCCCGACTACTATAGTGTTATCTCTTCCGCCACCACCGCCACAGTCTCTTAGCTTATCACTTCCTTCGCCGCCTCAACCTCCACCATCGTCTTCATTTCACGCTGAGCCTATACCGCCCACAGTAGGTACATCATCGACAAAGCGAAGGAGAACAACGCCGGGAGAAACCACCGCTGGAGGAGAGAGGGAGGTAGAGGAGGATGCGGTTGGGGTGGCGTTGTCTAGATGCACGTCTGTGATCACACAAGTGATAAGAGAGAATGAGGAGGGACAAGAGAGGAGGCATAAGGAAGTGGTGAGGCTACAAGAGAGGAGACTAAAGATTGAGGAATCAAAAACTGAAATAAATAGACAAGGTATGAATGGTTTGGTAGACGCCATTAATCAACTCGCAAGCTCTATTCTTGCTTTGGCTTCTTCTTCTTGCCATAATAATCGCAATCATCAAGGAGGTCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

340

Amino Acids

38.3

Weight (kDa)

9.03

Isoelectric Point (pI)

77.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 20 - 118 3.8e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AccI GTMKAC 1 cut(s) 933
AclWI GGATC 2 cut(s) 8, 487
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 936
AfaI GTAC 3 cut(s) 126, 287, 688
AfiI CCNNNNNNNGG 3 cut(s) 23, 339, 683
AflIII ACRYGT 2 cut(s) 387, 408
AhdI GACNNNNNGTC 1 cut(s) 412
AjiI CACGTC 2 cut(s) 409, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AleI CACNNNNGTG 2 cut(s) 794, 806
AluBI AGCT 5 cut(s) 172, 421, 530, 612, 957
AluI AGCT 5 cut(s) 172, 421, 530, 612, 957
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 3 cut(s) 71, 609, 868
AlwI GGATC 2 cut(s) 8, 487
AoxI GGCC 1 cut(s) 487
AseI ATTAAT 1 cut(s) 942
AspS9I GGNCC 1 cut(s) 1013
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 2 cut(s) 38, 868
AvaII GGWCC 1 cut(s) 1013
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 5 cut(s) 25, 100, 340, 532, 652
BceAI ACGGC 2 cut(s) 143, 452
BclI TGATCA 1 cut(s) 798
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 3 cut(s) 71, 609, 868
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 1 cut(s) 570
BisI GCNGC 4 cut(s) 459, 462, 465, 629
BlpI GCTNAGC 2 cut(s) 543, 663
BlsI GCNGC 4 cut(s) 460, 463, 466, 630
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 1 cut(s) 1013
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgBI CACGTC 2 cut(s) 409, 792
BmgT120I GGNCC 1 cut(s) 1013
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 4 cut(s) 540, 562, 751, 776
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 2 cut(s) 223, 756
Bpu1102I GCTNAGC 2 cut(s) 543, 663
BpuMI CCSGG 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 339, 683
Bse1I ACTGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 218, 766
BseLI CCNNNNNNNGG 3 cut(s) 23, 339, 683
BseMII CTCAG 5 cut(s) 348, 408, 410, 557, 654
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 8 cut(s) 206, 439, 442, 753, 770, 839, 853, 886
BsgI GTGCAG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 489
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 175, 719
BslFI GGGAC 2 cut(s) 263, 843
BslI CCNNNNNNNGG 3 cut(s) 23, 339, 683
BsmAI GTCTC 3 cut(s) 71, 609, 868
BsmFI GGGAC 2 cut(s) 263, 843
BsnI GGCC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 6 cut(s) 13, 131, 276, 293, 492, 798
Bsp1720I GCTNAGC 2 cut(s) 543, 663
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 5 cut(s) 349, 409, 409, 556, 655
BspHI TCATGA 1 cut(s) 258
BspPI GGATC 2 cut(s) 8, 487
BsrI ACTGG 1 cut(s) 344
BssMI GATC 6 cut(s) 13, 131, 276, 293, 492, 798
BssNI GRCGYC 1 cut(s) 936
Bst4CI ACNGT 6 cut(s) 70, 322, 479, 485, 603, 682
Bst6I CTCTTC 3 cut(s) 202, 444, 588
BstACI GRCGYC 1 cut(s) 936
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 7 cut(s) 357, 396, 417, 497, 543, 608, 663
BstF5I GGATG 2 cut(s) 218, 766
BstKTI GATC 6 cut(s) 16, 134, 279, 296, 495, 801
BstMAI GTCTC 3 cut(s) 71, 609, 868
BstMBI GATC 6 cut(s) 13, 131, 276, 293, 492, 798
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 4 cut(s) 127, 464, 595, 673
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 718
BstSFI CTRYAG 1 cut(s) 570
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 1 cut(s) 489
BtrI CACGTC 2 cut(s) 409, 792
BtsCI GGATG 2 cut(s) 218, 766
BtsIMutI CAGTG 2 cut(s) 75, 239
Cac8I GCNNGC 1 cut(s) 955
CciI TCATGA 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 1013
CseI GACGC 2 cut(s) 17, 944
Csp6I GTAC 3 cut(s) 125, 286, 687
CviAII CATG 3 cut(s) 259, 388, 1020
CviQI GTAC 3 cut(s) 125, 286, 687
DdeI CTNAG 7 cut(s) 357, 396, 417, 497, 543, 608, 663
DpnI GATC 6 cut(s) 15, 133, 278, 295, 494, 800
DpnII GATC 6 cut(s) 13, 131, 276, 293, 492, 798
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 202, 444, 588
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 3 cut(s) 202, 444, 588
EciI GGCGGA 2 cut(s) 445, 576
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 1013
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 3 cut(s) 262, 391, 1023
FaqI GGGAC 2 cut(s) 263, 843
FatI CATG 3 cut(s) 258, 387, 1019
FbaI TGATCA 1 cut(s) 798
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 4 cut(s) 459, 462, 465, 629
FokI GGATG 2 cut(s) 225, 773
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 459, 462, 465, 629
FspBI CTAG 1 cut(s) 783
GluI GCNGC 4 cut(s) 459, 462, 465, 629
GsuI CTGGAG 2 cut(s) 223, 756
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 175, 719
HgaI GACGC 2 cut(s) 17, 944
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 3 cut(s) 262, 391, 1023
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 3 cut(s) 229, 305, 890
HpaII CCGG 2 cut(s) 175, 719
HphI GGTGA 2 cut(s) 38, 868
Hpy166II GTNNAC 5 cut(s) 29, 125, 427, 934, 1016
Hpy188I TCNGA 5 cut(s) 136, 281, 399, 418, 534
Hpy188III TCNNGA 3 cut(s) 259, 562, 783
Hpy8I GTNNAC 5 cut(s) 29, 125, 427, 934, 1016
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 143, 453, 633, 699
HpyCH4III ACNGT 6 cut(s) 70, 322, 479, 485, 603, 682
HpyCH4IV ACGT 2 cut(s) 408, 791
HpyCH4V TGCA 4 cut(s) 51, 237, 553, 789
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 464, 595, 673
HpyF3I CTNAG 7 cut(s) 357, 396, 417, 497, 543, 608, 663
HpySE526I ACGT 2 cut(s) 408, 791
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 3 cut(s) 262, 391, 1023
Ksp22I TGATCA 1 cut(s) 798
Kzo9I GATC 6 cut(s) 13, 131, 276, 293, 492, 798
LmnI GCTCC 2 cut(s) 177, 535
LweI GCATC 4 cut(s) 540, 562, 751, 776
MaeI CTAG 1 cut(s) 783
MaeII ACGT 2 cut(s) 408, 791
MaeIII GTNAC 4 cut(s) 215, 322, 383, 479
MalI GATC 6 cut(s) 15, 133, 278, 295, 494, 800
MboI GATC 6 cut(s) 13, 131, 276, 293, 492, 798
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 555
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 315, 942
MslI CAYNNNNRTG 2 cut(s) 794, 806
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 2 cut(s) 175, 719
MspR9I CCNGG 1 cut(s) 720
MwoI GCNNNNNNNGC 4 cut(s) 127, 464, 595, 673
NciI CCSGG 1 cut(s) 720
NdeII GATC 6 cut(s) 13, 131, 276, 293, 492, 798
NlaIII CATG 3 cut(s) 262, 391, 1023
NmeAIII GCCGAG 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 555
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 2 cut(s) 794, 806
PagI TCATGA 1 cut(s) 258
PciI ACATGT 1 cut(s) 387
PfeI GAWTC 3 cut(s) 229, 305, 890
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 4 cut(s) 460, 463, 466, 630
Ple19I CGATCG 1 cut(s) 134
PscI ACATGT 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 492
PvuI CGATCG 1 cut(s) 134
RsaI GTAC 3 cut(s) 126, 287, 688
RsaNI GTAC 3 cut(s) 125, 286, 687
RseI CAYNNNNRTG 2 cut(s) 794, 806
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 315, 942
SatI GCNGC 4 cut(s) 459, 462, 465, 629
Sau3AI GATC 6 cut(s) 13, 131, 276, 293, 492, 798
Sau96I GGNCC 1 cut(s) 1013
ScrFI CCNGG 1 cut(s) 720
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 4 cut(s) 540, 562, 751, 776
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 1013
SmiMI CAYNNNNRTG 2 cut(s) 794, 806
Sse9I AATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 783
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 718
TaaI ACNGT 6 cut(s) 70, 322, 479, 485, 603, 682
TaiI ACGT 2 cut(s) 411, 794
TaqI TCGA 2 cut(s) 20, 695
TasI AATT 1 cut(s) 61
TauI GCSGC 4 cut(s) 461, 464, 467, 631
TfiI GAWTC 3 cut(s) 229, 305, 890
Tru1I TTAA 2 cut(s) 315, 942
Tru9I TTAA 2 cut(s) 315, 942
TscAI CASTG 2 cut(s) 75, 239
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 642, 935
TspRI CASTG 2 cut(s) 75, 239
Van91I CCANNNNNTGG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 1013
VspI ATTAAT 1 cut(s) 942
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 1 cut(s) 783
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.